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embryotimecourse2018

Data and analysis scripts for our Embryo Timecourse paper.

episcale_signal

A platofrm to couple cell mechanics and cell Signaling for epithelial cells

examples

A repository to host extended examples and tutorials.

excelerate-scrnaseq

Single RNA-seq data analysis with R (Finland, May, 2019)

extracellular_matrix_grad

MATLAB code for extracellular matrix class

fgbio-scala

Tools for working with genomic and high throughput sequencing data.

fibroblast_signaling_network_model

This is the repository for our lab's network model of cardiac fibroblast signal transduction. Includes reaction topology, ODE model, and accompanying analysis scripts.

fict

FISH Iterative Cell Typing

formal-systems-in-biology

Application of formal systems to model biological systems

gating

gatk4-data-processing

Workflows for processing high-throughput sequencing data for variant discovery with GATK4 and related tools

gatkmain

Official code repository for GATK versions 4 and up

gcl_for_multi_omics

gcng

using graph convolutional neural network and spaital transcriptomics data to infer cell-cell interactions

gdc-client

GDC Data Transfer Tool

gdsctools

Tools related to the Genomics of Drug Sensitivity in Cancer (GDSC) projects (http://www.cancerrxgene.org/ )

gennifer-grnboost2

genomegraphs.jl

A modern genomics framework for julia

gh-actions-importer

GitHub Actions Importer helps you plan and automate the migration of Azure DevOps, CircleCI, GitLab, Jenkins, and Travis CI pipelines to GitHub Actions.

gillespie-algorithm-simulation

giotto

Spatial omics analysis toolbox

gistic2

Genomic Identification of Significant Targets in Cancer (GISTIC), version 2

glue

Graph-linked unified embedding for single-cell multi-omics data integration

gmxtools

tools for GROMACS

gnaq_model

gnina

A deep learning framework for molecular docking

granatum

grema

GREMA: Modelling of emulated gene regulatory networks with confidence levels based on evolutionary intelligence to cope with the underdetermined problem

grnboost2-configuration

Repository for storing general use configuration files for grnboost2

gromacs

Public/backup repository of the GROMACS molecular simulation toolkit. Please do not mine the metadata blindly; we use https://gitlab.com/gromacs/gromacs for code review and issue tracking.