🔥 HAPI FHIR - Java API for HL7 FHIR Clients and Servers
Home Page: http://hapifhir.io
License: Apache License 2.0
HAPI FHIR - Java API for HL7 FHIR Clients and Servers
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This project is Open Source, licensed under the Apache Software License 2.0.
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I made a search method for a resource provider with the following signature:
@Search
public List (Location) searchByName(
@OptionalParam(name="partof") ReferenceParam thePartOfId,
@OptionalParam(name="partof.name") StringParam thePartOfName,
) {
When calling the method from my annotation client and passing in values for both parameters i got the following exception:
HTTP 400 Bad Request: Multiple values detected for non-repeatable parameter 'partof'. This server is not configured to allow multiple (AND/OR) values for this param.
That's not such a big deal because my intention is to have the caller use only one of the parameters but not both. Although, when calling the method with only the second parameter supplied (i.e. "partof.name") the server mapped the value to the first parameter. Thus in the resource provider object the "partof" parameter was populated with the value that should have been mapped to the "partof.name" parameter.
As workaround I'm going to try using a parameter name of "_partof.name" instead. I have a feeling that should work but it's not the preferred approach.
After encoding a resource, resource' properties are modified. It seems that BaseParser.java works not correctly. If the same resource is encoded again, the created xml is not the same for some resources, like Composition.
Here could be the beginning of the problem:
public void containResourcesForEncoding(IResource theResource) {
containResourcesForEncoding(theResource, theResource);
}
I create a patient resource successfully: http://fhirtest.uhn.ca/base/Patient/1658
<Patient xmlns="http://hl7.org/fhir">
<text>
<status value="generated"/>
<div xmlns="http://www.w3.org/1999/xhtml">Zimmerman, Mr Brian,</div>
</text>
<identifier>
<use value="usual"/>
<label value="URNo"/>
<value value="89532"/>
</identifier>
<name>
<text value="王海生"/>
<family value="王"/>
<given value="海生"/>
</name>
<telecom>
<system value="phone"/>
<value value="9899 9878"/>
<use value="home"/>
</telecom>
<telecom>
<system value="email"/>
<value value="[email protected]"/>
<use value="home"/>
</telecom>
<gender>
<coding>
<system value="http://hl7.org/fhir/v3/AdministrativeGender"/>
<code value="M"/>
<display value="Male"/>
</coding>
<text value="Male"/>
</gender>
<birthDate value="1986-07-10"/>
<address id="1c1f583f220d4c06984909210ba9e6ed">
<use value="home"/>
<text value="99 Houston Road, BENTLEIGH, 3204"/>
<line value="99 Houston Road"/>
<city value="BENTLEIGH"/>
<state value="Victoria"/>
<zip value="3204"/>
<period>
<start value="2006-06-17"/>
</period>
</address>
<active value="true"/>
</Patient>
then I want to update this one with the following :PUT http://fhirtest.uhn.ca/base/Patient/1658
<Patient xmlns="http://hl7.org/fhir">
<text>
<status value="generated"/>
<div xmlns="http://www.w3.org/1999/xhtml">Zimmerman, Mr Brian,</div>
</text>
<identifier>
<use value="usual"/>
<label value="URNo"/>
<value value="89532"/>
</identifier>
<name>
<text value="王海生"/>
<family value="王"/>
<given value="海生"/>
</name>
<telecom>
<system value="phone"/>
<value value="9899 9878"/>
<use value="home"/>
</telecom>
<telecom>
<system value="email"/>
<value value="[email protected]"/>
<use value="home"/>
</telecom>
<gender>
<coding>
<system value="http://hl7.org/fhir/v3/AdministrativeGender"/>
<code value="M"/>
<display value="Male"/>
</coding>
<text value="Male"/>
</gender>
<birthDate value="1986-07-10"/>
<address id="1c1f583f220d4c06984909210ba9e6ed">
<use value="home"/>
<text value="99 Houston Road, BENTLEIGH, 3204"/>
<line value="99 Houston Road"/>
<city value="BENTLEIGH"/>
<state value="Victoria"/>
<zip value="3204"/>
<period>
<start value="2006-06-16"/>
</period>
</address>
<active value="true"/>
</Patient>
Then I get the following info:
Status Code: 204 No Content
Access-Control-Allow-Origin: *
Connection: close
Content-Length: 0
Content-Type: text/plain; charset=UTF-8
Date: Tue, 05 Aug 2014 08:57:04 GMT
Location: http://fhirtest.uhn.ca/base/Patient/1658/_history/6
Server: GlassFish Server Open Source Edition 4.0
X-Powered-By: HAPI FHIR 0.5-SNAPSHOT RESTful Server
access-control-allow-methods: GET, POST, PUT, DELETE
access-control-expose-headers: Content-Location
first make a search
GET http://fhirtest.uhn.ca/base/Organization/1665 with 404 not found
then PUT http://fhirtest.uhn.ca/base/Organization/1665
<Organization xmlns="http://hl7.org/fhir">
<extension url="http://fhir.connectinggta.ca/Profile/organization#providerIdPool">
<valueUri value="urn:oid:2.16.840.1.113883.3.239.23.21.1"/>
</extension>
<text>
<status value="generated"/>
<div xmlns="http://www.w3.org/1999/xhtml"/>
</text>
<identifier>
<use value="official"/>
<label value="HSP 2.16.840.1.113883.3.239.23.21"/>
<system value="urn:cgta:hsp_ids"/>
<value value="urn:oid:2.16.840.1.113883.3.239.23.21"/>
</identifier>
<name value="火星第五人民医院"/>
</Organization>
It should be
Status Code: 201 Created
Connection: close
Content-Encoding: gzip
Content-Length: 1846
Content-Location: http://fhir.healthintersections.com.au/open/Organization/1665/_history/1
Content-Type: text/html; charset=UTF-8
Date: Wed, 06 Aug 2014 07:33:40 GMT
Expires: Tue, 05 Aug 2014 07:33:40 GMT
Location: http://fhir.healthintersections.com.au/open/Organization/1665/_history/1
Server: Health Intersections FHIR Server
access-control-allow-methods: GET, POST, PUT, DELETE
access-control-allow-origin: *
access-control-expose-headers: Content-Location
but right now it is
Status Code: 404 Not Found
Connection: close
Content-Length: 39
Content-Type: text/plain;charset=ISO-8859-1
Date: Wed, 06 Aug 2014 07:24:14 GMT
Server: GlassFish Server Open Source Edition 4.0
X-Powered-By: HAPI FHIR 0.6-SNAPSHOT RESTful Server
access-control-allow-methods: GET, POST, PUT, DELETE
access-control-allow-origin: *
access-control-expose-headers: Content-Location
Reported on the mailing list here by Joseph Althman: https://groups.google.com/forum/#!topic/hapi-fhir/MT6eDnuzItk
The following date field parses successfully even though it's invalid:
"birthDate":"2000-15-31"
This should probably be an exception flat out.
I test the fix on #60 , it's OK now, thanks!
Then I try some testing about Search by UTF-8 encoding parameters as below:
Bundle bundle = client.search().forResource(Organization.class).where(Organization.NAME.matchesExactly().value("測試醫院"))
.prettyPrint().encodedJson().execute();
return the garbled one as http://fhirtest.uhn.ca/base/Organization?_id=6030
it shall be no garbled one as http://fhirtest.uhn.ca/base/Organization?_id=6032
It seems a server issue diff with the client issue at #60
I am using FifoMemoryPagingProvider and SimpleBundleProvider to store+page my resources. The first page of results appears as expected, and so does the second page when hitting the rel=next link. But when I go back to the first page following the rel=previous link, the resources which were previously contained are duplicated as top-level bundle resources with the generated ID (locally scoped) appearing as if it were globally scoped.
As an example, a single DiagnosticReport in the bundle has contained Observations.
{
resourceType: 'DiagnosticReport',
contained: [{
resourceType: 'Observation',
id: 1
}],
result: [{
reference: '#1'
}]
}When I return to this page (going next then previous), these Observations appear in the top-level bundle.
{
entry: [{
content: {
resourceType: 'DiagnosticReport',
contained: [{
resourceType: 'Observation',
id: 1
}],
result: [{
reference: 'Observation/1'
}]
}
},{
content: {
resourceType: 'Observation',
id: 1
}
}]
}Sorry, these aren't exact examples, but I hope it helps to visualize the problem I'm describing.
One of the test case is failing for us when running mvn install
testHistoryWithParams inside hapi-fhir-structures-dstu/src/test/java/ca/uhn/fhir/rest/client/ClientTest.java
Line 540:
assertThat(capt.getAllValues().get(1).getURI().toString(), containsString("_since="+expectedDateString));
Throws the error
Expected: "_since=2012-01-02T00%3A01%3A02.000+13%3A00"
but: "......_since=2012-01-02T00%3A01%3A02.000%2B13%3A00...."
*with some useless data removed
It seems like when it adds the + for the timezone it encodes it to its url encoded value (%2B) in one case, but leaves it as + for the other case.
there is a method http://jamesagnew.github.io/hapi-fhir/doc_rest_operations.html#type_validate
but how could I do some validation against the base profile requirement provided by fhir spec (let`s say it is not well-formed xml or two name elements appear in the Organization resource instance)and my own profile constraints
Exceptions returned from the FHIR server contain the message string in the response body. On the client side, calling getMessage() on the exception only obtains minimal information (e.g. HTTP 500 Internal Server Error), the client needs to cast the exception to BaseServerResponseException and call getResponseBody and then navigate to the issue.details field to obtain the message string. It would be more useful to have the message string added to the message field in the Exception object. Most logging logic in java prints/logs data from the message field.
The toString method in ValidationResult calls the toDescription method which will invoke the getIssueFirstRep method on the operation outcome. Unfortunately this method will add a new issue to the operation outcome if one didn't already exist. The success method of ValidationResult attempts to use the lack of issues as an indicator of success. This isn't always a true condition though given how the operation outcome class works.
Since I introduced this bug I will work on a PR to fix it. Sorry about that.
Hello,
we were able to run demo version of our radiology apps based on HAPI 0.3 under Tomcat-8, but we would like to be able to run it under Tomcat-6 since our existing cust PROD env uses Tomcat-6 to run other existing apps.
Please provide direction on how to do this.
Thank you
Bernard
The following request causes a 500:
http://fhirtest.uhn.ca/base/Observation/_search?subject%3APatient._id=d1132446701&_count=999&_include=Observation.subject
Stack trace:
java.lang.NumberFormatException: For input string: "d1132446701"
java.lang.NumberFormatException: For input string: "d1132446701"
at java.lang.NumberFormatException.forInputString(NumberFormatException.java:65)
at java.lang.Long.parseLong(Long.java:441)
at java.lang.Long.parseLong(Long.java:483)
at ca.uhn.fhir.model.primitive.IdDt.getIdPartAsLong(IdDt.java:229)
at ca.uhn.fhir.jpa.dao.BaseFhirDao.loadResourcesById(BaseFhirDao.java:959)
at ca.uhn.fhir.jpa.dao.FhirResourceDao$2$1.doInTransaction(FhirResourceDao.java:534)
at ca.uhn.fhir.jpa.dao.FhirResourceDao$2$1.doInTransaction(FhirResourceDao.java:481)
at org.springframework.transaction.support.TransactionTemplate.execute(TransactionTemplate.java:133)
at ca.uhn.fhir.jpa.dao.FhirResourceDao$2.getResources(FhirResourceDao.java:481)
at ca.uhn.fhir.rest.server.RestfulServer.createBundleFromBundleProvider(RestfulServer.java:990)
at ca.uhn.fhir.rest.method.BaseResourceReturningMethodBinding.invokeServer(BaseResourceReturningMethodBinding.java:243)
at ca.uhn.fhir.rest.method.SearchMethodBinding.invokeServer(SearchMethodBinding.java:56)
at ca.uhn.fhir.rest.server.RestfulServer.handleRequest(RestfulServer.java:616)
at ca.uhn.fhir.rest.server.RestfulServer.doGet(RestfulServer.java:125)
at javax.servlet.http.HttpServlet.service(HttpServlet.java:687)
at javax.servlet.http.HttpServlet.service(HttpServlet.java:790)
at org.apache.catalina.core.StandardWrapper.service(StandardWrapper.java:1682)
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:344)
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:214)
at org.ebaysf.web.cors.CORSFilter.handleNonCORS(CORSFilter.java:437)
at org.ebaysf.web.cors.CORSFilter.doFilter(CORSFilter.java:172)
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:256)
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:214)
at org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:316)
at org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:160)
at org.apache.catalina.core.StandardPipeline.doInvoke(StandardPipeline.java:734)
at org.apache.catalina.core.StandardPipeline.invoke(StandardPipeline.java:673)
at com.sun.enterprise.web.WebPipeline.invoke(WebPipeline.java:99)
at org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:174)
at org.apache.catalina.connector.CoyoteAdapter.doService(CoyoteAdapter.java:357)
at org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:260)
at com.sun.enterprise.v3.services.impl.ContainerMapper.service(ContainerMapper.java:188)
at org.glassfish.grizzly.http.server.HttpHandler.runService(HttpHandler.java:191)
at org.glassfish.grizzly.http.server.HttpHandler.doHandle(HttpHandler.java:168)
at org.glassfish.grizzly.http.server.HttpServerFilter.handleRead(HttpServerFilter.java:189)
at org.glassfish.grizzly.filterchain.ExecutorResolver$9.execute(ExecutorResolver.java:119)
at org.glassfish.grizzly.filterchain.DefaultFilterChain.executeFilter(DefaultFilterChain.java:288)
at org.glassfish.grizzly.filterchain.DefaultFilterChain.executeChainPart(DefaultFilterChain.java:206)
at org.glassfish.grizzly.filterchain.DefaultFilterChain.execute(DefaultFilterChain.java:136)
at org.glassfish.grizzly.filterchain.DefaultFilterChain.process(DefaultFilterChain.java:114)
at org.glassfish.grizzly.ProcessorExecutor.execute(ProcessorExecutor.java:77)
at org.glassfish.grizzly.nio.transport.TCPNIOTransport.fireIOEvent(TCPNIOTransport.java:838)
at org.glassfish.grizzly.strategies.AbstractIOStrategy.fireIOEvent(AbstractIOStrategy.java:113)
at org.glassfish.grizzly.strategies.WorkerThreadIOStrategy.run0(WorkerThreadIOStrategy.java:115)
at org.glassfish.grizzly.strategies.WorkerThreadIOStrategy.access$100(WorkerThreadIOStrategy.java:55)
at org.glassfish.grizzly.strategies.WorkerThreadIOStrategy$WorkerThreadRunnable.run(WorkerThreadIOStrategy.java:135)
at org.glassfish.grizzly.threadpool.AbstractThreadPool$Worker.doWork(AbstractThreadPool.java:564)
at org.glassfish.grizzly.threadpool.AbstractThreadPool$Worker.run(AbstractThreadPool.java:544)
at java.lang.Thread.run(Thread.java:722)
Note that the patient is readable via a patient request, so it doesn't seem to be bogus data in the patient.
The profiles are stored hashed by the resource name; the generated ids expect the profiles to be hashed by "Profile/resourcename". As a stopgap, one can intercept the read request and use IdDt.getIdPart() on the ServerProfileProvider.getProfileById()
I created a ResourceProvider and client with the following two search method signatures:
@Search
public List search(
@OptionalParam(name=Location.SP_NAME) StringParam theName,
) {}
@Search
public List searchById(
@RequiredParam(name = "_id") StringParam theId,
) {}
When calling "searchById" in the client, the fhir server ended up executing the "search" method. When I changed the name of the "search" method in the client and the ResourceProvider to something else (e.g. "seachByName") the issue went away. Note, the queryName search annotation attribute was not used. I think the fhir server gets confused when the method has a name of "search" and or when the parameter types are the same across multiple methods.
While messing around with updating resources and adding tags to them, I noticed that every time I update a resource on the HAPI test server and include a profile tag in the update, a new instance of the tag is added to the resource's tag list.
Fiddler output for the resource in question:
HTTP/1.1 200 OK
Date: Fri, 26 Sep 2014 13:43:54 GMT
Server: GlassFish Server Open Source Edition 4.0
Content-Location: http://fhirtest.uhn.ca/base/Observation/4041/_history/4
X-Powered-By: HAPI FHIR 0.6-SNAPSHOT RESTful Server
Last-Modified: 2014-09-23T12:45:05.913-04:00
Category: http://fhirstorm.dyndns.org:8080/FhirStorm/fhir/Profile/Observation; scheme="http://hl7.org/fhir/tag/profile"
Category: http://fhirstorm.dyndns.org:8080/FhirStorm/fhir/Profile/Observation; scheme="http://hl7.org/fhir/tag/profile"
Category: http://fhirstorm.dyndns.org:8080/FhirStorm/fhir/Profile/Observation; scheme="http://hl7.org/fhir/tag/profile"
Category: http://fhirstorm.dyndns.org:8080/FhirStorm/fhir/Profile/Observation; scheme="http://hl7.org/fhir/tag/profile"
Category: http://fhirstorm.dyndns.org:8080/FhirStorm/fhir/Profile/Observation; scheme="http://hl7.org/fhir/tag/profile"
Category: http://fhirstorm.dyndns.org:8080/FhirStorm/fhir/Profile/Observation; scheme="http://hl7.org/fhir/tag/profile"
Category: http://fhirstorm.dyndns.org:8080/FhirStorm/fhir/Profile/Observation; scheme="http://hl7.org/fhir/tag/profile"
Category: http://fhirstorm.dyndns.org:8080/FhirStorm/fhir/Profile/Observation; scheme="http://hl7.org/fhir/tag/profile"
Content-Type: application/xml+fhir;charset=UTF-8
Connection: close
Transfer-Encoding: chunked
30d
0hapi-fhir-base/src/test/java/ca/uhn/fhir/rest/server/ResfulServerMethodTest.java
line 289
assertEquals(404, status.getStatusLine().getStatusCode());
it supposed to be a 404,but it actually return 500
Add a new ResourceProvider to the RESTful Server Example (I did Observation).
Retrieve the automatically generated profile from the server
Attempt to validate the profile against fhir-all.xsd.
Validation will fail, as the profile is missing the "status" element (this is the first of a bunch of missing things, I added 5 before I gave up)
The test server throws a java.lang.ClassCastException (no stack trace is given) when trying to fetch the list of Questionnaire resources.
GET http://fhirtest.uhn.ca/base/Questionnaire?_pretty=true
I will provide more info when I do further tests but I thought I'd report this as is for now.
I made a search method for a resource provider with the following signature:
@Search
public List searchByName(
@OptionalParam(name="partof") ReferenceParam thePartOfId,
@OptionalParam(name="partof.name") StringParam thePartOfName,
) {
When calling the method from my annotation client and passing in values for both parameters i got the following exception:
HTTP 400 Bad Request: Multiple values detected for non-repeatable parameter 'partof'. This server is not configured to allow multiple (AND/OR) values for this param.
That's not such a big deal because my intention is to have the caller use only one of the parameters but not both. Although, when calling the method with only the second parameter supplied (i.e. "partof.name") the server mapped the value to the first parameter. Thus in the resource provider object the "partof" parameter was populated with the value that should have been mapped to the "partof.name" parameter.
As workaround I'm going to try using a parameter name of "_partof.name" instead. I have a feeling that should work but it's not the preferred approach.
After talking with James, the way profile tags are added for custom resources is a bit confusing, and unless you can provide the complete url to your profile, there doesn't seem to be a good way to use the custom profile tagging feature.
So, we think profile() should be removed, and the profile should be based on the id(), augmented by the server address strategy.
That is... if:
@ResourceDef(name="DiagnosticReport", id="customdiagnosticreport")
public class CustomDiagnosticReport...
and your server was at
http://myserver.zippy.com/fhir
your profile tag would end up
http://myserver.zippy.com/fhir/Profile/customdiagnosticreport
Per the transaction definition: http://hl7.org/implement/standards/fhir/http.html#transaction
A client may assign temporary ids to new resources and then refer to them from other places in the transaction. When the client intends a resource to have a transient identity that the server must replace, it should use a cid: url on the resource - that is, a url with the scheme "cid:" per RFC 2392. Servers SHALL replace these temporary ids when processing the transaction.
The JPA module currently saves these "cid:" URIs as is, which is wrong.
For setters that take ResourceReferences, it'd be convenient to have alternate methods that took resources and created the ResourceReference for you.
As suggested by Bill de Beaubien, BaseElement's methods for returning extensions return immutable lists and have no setters for those lists (just an addXX method). This is pretty restrictive.
create a patient with the below
<Patient xmlns="http://hl7.org/fhir">
<language value="zh-CN"/>
<text>
<status value="generated"/>
<div xmlns="http://www.w3.org/1999/xhtml">Zimmerman, Mr Brian,</div>
</text>
<identifier>
<use value="usual"/>
<label value="URNo"/>
<value value="89532"/>
</identifier>
<name>
<text value="王海生"/>
<family value="王"/>
<given value="海生"/>
</name>
<telecom>
<system value="phone"/>
<value value="9899 9878"/>
<use value="home"/>
</telecom>
<telecom>
<system value="email"/>
<value value="[email protected]"/>
<use value="home"/>
</telecom>
<gender>
<coding>
<system value="http://hl7.org/fhir/v3/AdministrativeGender"/>
<code value="M"/>
<display value="Male"/>
</coding>
<text value="Male"/>
</gender>
<birthDate value="1997-01-01"/>
<address id="1c1f583f220d4c06984909210ba9e6ed">
<use value="home"/>
<text value="99 Houston Road, BENTLEIGH, 3204"/>
<line value="99 Houston Road"/>
<city value="BENTLEIGH"/>
<state value="Victoria"/>
<zip value="3204"/>
<period>
<start value="2006-06-16"/>
</period>
</address>
<active value="true"/>
</Patient>
then GET http://fhirtest.uhn.ca/base/Patient/_search?_language=zh-CN
return 13
it is supposed to be 1
MyObservationWithExtensions.java demonstrates how to do nested extensions with HAPI.
I'd like a similar mechanism which would allow me to define a set of extensions in one place so that I can reuse them in multiple custom resources, then include them in the resources that needed them.
So we'd have a class like
@block(name = "Resource.StandardExtensions)
public class StandardExtensions
{
@child(name="idExt", order = 0)
@extension(url= Extensions.Id, definedLocally=true, isModifier=false)
@description(shortDefinition = "Contains the id of the resource")
private StringDt myIdExt;
// imagine setIdExt/getIdExt here
@Child(name="buildDate", order = 1)
@Extension(url = "urn:standardext:buildDate", definedLocally = true, isModifier = false)
private StringDt myBuildDate;
// imagine setBuildDate/getBuildDate here
...
}
Then in, say MyPatient:
...
@ExtensionBlock
private StandardExtensions myStandardExtensions;
Then when the profile-generator ripped through MyPatient, it'd add all of the extensions defined by StandardExtensions to my resource.
Hi, Jamesagnew:
I try to create a new ImagingStudy resource by following samples
http://fhir.healthintersections.com.au/open/ImagingStudy/1/
http://fhir.healthintersections.com.au/open/ImagingStudy/4/
Either in local hapi-fhir-jpaserver or uhn server(http://fhirtest.uhn.ca/base/ImagingStudy/) both return:
500 Internal Server Error
Failed to call access method
and error log from my local server:
2014-11-14 12:48:59.378 [http-8000-6] [192.168.100.7] [Mozilla/5.0 (Windows NT 6.1) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/38.0.2125.111 Safari/537.36] INFO o.h.e.i.StatisticalLoggingSessionEventListener Session Metrics {
1194565 nanoseconds spent acquiring 1 JDBC connections;
0 nanoseconds spent releasing 0 JDBC connections;
0 nanoseconds spent preparing 0 JDBC statements;
0 nanoseconds spent executing 0 JDBC statements;
0 nanoseconds spent executing 0 JDBC batches;
0 nanoseconds spent performing 0 L2C puts;
0 nanoseconds spent performing 0 L2C hits;
0 nanoseconds spent performing 0 L2C misses;
0 nanoseconds spent executing 0 flushes (flushing a total of 0 entities and 0 collections);
0 nanoseconds spent executing 0 partial-flushes (flushing a total of 0 entities and 0 collections)
}
2014-11-14 12:48:59.394 [http-8000-6] [] [] ERROR c.u.f.r.m.BaseOutcomeReturningMethodBinding Internal error during method invocation
ca.uhn.fhir.rest.server.exceptions.InternalErrorException: Failed to call access method
at ca.uhn.fhir.rest.method.BaseMethodBinding.invokeServerMethod(BaseMethodBinding.java:195) ~[hapi-fhir-base-0.8-SNAPSHOT.jar:na]
at ca.uhn.fhir.rest.method.BaseOutcomeReturningMethodBinding.invokeServer(BaseOutcomeReturningMethodBinding.java:130) ~[hapi-fhir-base-0.8-SNAPSHOT.jar:na]
at ca.uhn.fhir.rest.method.CreateMethodBinding.invokeServer(CreateMethodBinding.java:36) [hapi-fhir-base-0.8-SNAPSHOT.jar:na]
at ca.uhn.fhir.rest.server.RestfulServer.handleRequest(RestfulServer.java:616) [hapi-fhir-base-0.8-SNAPSHOT.jar:na]
at ca.uhn.fhir.rest.server.RestfulServer.doPost(RestfulServer.java:135) [hapi-fhir-base-0.8-SNAPSHOT.jar:na]
at javax.servlet.http.HttpServlet.service(HttpServlet.java:637) [servlet-api.jar:na]
at javax.servlet.http.HttpServlet.service(HttpServlet.java:717) [servlet-api.jar:na]
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:290) [catalina.jar:6.0.26]
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206) [catalina.jar:6.0.26]
at org.ebaysf.web.cors.CORSFilter.handleSimpleCORS(CORSFilter.java:302) [cors-filter-1.0.1.jar:na]
at org.ebaysf.web.cors.CORSFilter.doFilter(CORSFilter.java:164) [cors-filter-1.0.1.jar:na]
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:235) [catalina.jar:6.0.26]
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206) [catalina.jar:6.0.26]
at org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:233) [catalina.jar:6.0.26]
at org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:191) [catalina.jar:6.0.26]
at org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:127) [catalina.jar:6.0.26]
at org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:102) [catalina.jar:6.0.26]
at org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:109) [catalina.jar:6.0.26]
at org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:298) [catalina.jar:6.0.26]
at org.apache.coyote.http11.Http11AprProcessor.process(Http11AprProcessor.java:859) [tomcat-coyote.jar:6.0.26]
at org.apache.coyote.http11.Http11AprProtocol$Http11ConnectionHandler.process(Http11AprProtocol.java:579) [tomcat-coyote.jar:6.0.26]
at org.apache.tomcat.util.net.AprEndpoint$Worker.run(AprEndpoint.java:1555) [tomcat-coyote.jar:6.0.26]
at java.lang.Thread.run(Thread.java:745) [na:1.7.0_72]
Caused by: java.lang.reflect.InvocationTargetException: null
at sun.reflect.GeneratedMethodAccessor232.invoke(Unknown Source) ~[na:na]
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) ~[na:1.7.0_72]
at java.lang.reflect.Method.invoke(Method.java:606) ~[na:1.7.0_72]
at ca.uhn.fhir.rest.method.BaseMethodBinding.invokeServerMethod(BaseMethodBinding.java:190) ~[hapi-fhir-base-0.8-SNAPSHOT.jar:na]
... 22 common frames omitted
Caused by: ca.uhn.fhir.context.ConfigurationException: Invalid path:
at ca.uhn.fhir.util.FhirTerser.getValues(FhirTerser.java:87) ~[hapi-fhir-base-0.8-SNAPSHOT.jar:na]
at ca.uhn.fhir.jpa.dao.BaseFhirDao.extractSearchParamNumber(BaseFhirDao.java:450) ~[hapi-fhir-jpaserver-base-0.8-SNAPSHOT.jar:na]
at ca.uhn.fhir.jpa.dao.BaseFhirDao.updateEntity(BaseFhirDao.java:1145) ~[hapi-fhir-jpaserver-base-0.8-SNAPSHOT.jar:na]
at ca.uhn.fhir.jpa.dao.FhirResourceDao.create(FhirResourceDao.java:161) ~[hapi-fhir-jpaserver-base-0.8-SNAPSHOT.jar:na]
at sun.reflect.GeneratedMethodAccessor233.invoke(Unknown Source) ~[na:na]
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) ~[na:1.7.0_72]
at java.lang.reflect.Method.invoke(Method.java:606) ~[na:1.7.0_72]
at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:317) ~[spring-aop-4.1.0.RELEASE.jar:4.1.0.RELEASE]
at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190) ~[spring-aop-4.1.0.RELEASE.jar:4.1.0.RELEASE]
at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157) ~[spring-aop-4.1.0.RELEASE.jar:4.1.0.RELEASE]
at org.springframework.transaction.interceptor.TransactionInterceptor$1.proceedWithInvocation(TransactionInterceptor.java:98) ~[spring-tx-4.1.0.RELEASE.jar:4.1.0.RELEASE]
at org.springframework.transaction.interceptor.TransactionAspectSupport.invokeWithinTransaction(TransactionAspectSupport.java:266) ~[spring-tx-4.1.0.RELEASE.jar:4.1.0.RELEASE]
at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:95) ~[spring-tx-4.1.0.RELEASE.jar:4.1.0.RELEASE]
at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179) ~[spring-aop-4.1.0.RELEASE.jar:4.1.0.RELEASE]
at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:207) ~[spring-aop-4.1.0.RELEASE.jar:4.1.0.RELEASE]
at com.sun.proxy.$Proxy65.create(Unknown Source) ~[na:na]
at ca.uhn.fhir.jpa.provider.JpaResourceProvider.create(JpaResourceProvider.java:54) ~[hapi-fhir-jpaserver-base-0.8-SNAPSHOT.jar:na]
... 26 common frames omitted
Can you help me to understand this problem? Thanks.
I try the same way to create new Patient resource is OK.
run
http://fhirtest.uhn.ca/base/Organization/2.16.840.1.113883.3.239.23.21/_history/4
is ok ,but
http://fhirtest.uhn.ca/base/Organization/2.16.840.1.113883.3.239.23.21/_history
http://fhirtest.uhn.ca/base/Organization/2.16.840.1.113883.3.239.23.21/_history/1
http://fhirtest.uhn.ca/base/Organization/2.16.840.1.113883.3.239.23.21/_history/2
http://fhirtest.uhn.ca/base/Organization/2.16.840.1.113883.3.239.23.21/_history/3
return the following
<OperationOutcome>
<text>
<status value="empty"/>
<div>
No narrative template available for resource profile: http://hl7.org/fhir/profiles/OperationOutcome
</div>
</text>
<issue>
<severity value="error"/>
<details value="ca.uhn.fhir.rest.server.exceptions.InternalErrorException: Failed to call access method ca.uhn.fhir.rest.server.exceptions.InternalErrorException: Failed to call access method at ca.uhn.fhir.rest.method.BaseMethodBinding.invokeServerMethod(BaseMethodBinding.java:199) at ca.uhn.fhir.rest.method.HistoryMethodBinding.invokeServer(HistoryMethodBinding.java:162) at ca.uhn.fhir.rest.method.BaseResourceReturningMethodBinding.invokeServer(BaseResourceReturningMethodBinding.java:199) at ca.uhn.fhir.rest.method.HistoryMethodBinding.invokeServer(HistoryMethodBinding.java:46) at ca.uhn.fhir.rest.server.RestfulServer.handleRequest(RestfulServer.java:555) at ca.uhn.fhir.rest.server.RestfulServer.doGet(RestfulServer.java:162) at javax.servlet.http.HttpServlet.service(HttpServlet.java:687) at javax.servlet.http.HttpServlet.service(HttpServlet.java:790) at org.apache.catalina.core.StandardWrapper.service(StandardWrapper.java:1682) at org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:318) at org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:160) at org.apache.catalina.core.StandardPipeline.doInvoke(StandardPipeline.java:734) at org.apache.catalina.core.StandardPipeline.invoke(StandardPipeline.java:673) at com.sun.enterprise.web.WebPipeline.invoke(WebPipeline.java:99) at org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:174) at org.apache.catalina.connector.CoyoteAdapter.doService(CoyoteAdapter.java:357) at org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:260) at com.sun.enterprise.v3.services.impl.ContainerMapper.service(ContainerMapper.java:188) at org.glassfish.grizzly.http.server.HttpHandler.runService(HttpHandler.java:191) at org.glassfish.grizzly.http.server.HttpHandler.doHandle(HttpHandler.java:168) at org.glassfish.grizzly.http.server.HttpServerFilter.handleRead(HttpServerFilter.java:189) at org.glassfish.grizzly.filterchain.ExecutorResolver$9.execute(ExecutorResolver.java:119) at org.glassfish.grizzly.filterchain.DefaultFilterChain.executeFilter(DefaultFilterChain.java:288) at org.glassfish.grizzly.filterchain.DefaultFilterChain.executeChainPart(DefaultFilterChain.java:206) at org.glassfish.grizzly.filterchain.DefaultFilterChain.execute(DefaultFilterChain.java:136) at org.glassfish.grizzly.filterchain.DefaultFilterChain.process(DefaultFilterChain.java:114) at org.glassfish.grizzly.ProcessorExecutor.execute(ProcessorExecutor.java:77) at org.glassfish.grizzly.nio.transport.TCPNIOTransport.fireIOEvent(TCPNIOTransport.java:838) at org.glassfish.grizzly.strategies.AbstractIOStrategy.fireIOEvent(AbstractIOStrategy.java:113) at org.glassfish.grizzly.strategies.WorkerThreadIOStrategy.run0(WorkerThreadIOStrategy.java:115) at org.glassfish.grizzly.strategies.WorkerThreadIOStrategy.access$100(WorkerThreadIOStrategy.java:55) at org.glassfish.grizzly.strategies.WorkerThreadIOStrategy$WorkerThreadRunnable.run(WorkerThreadIOStrategy.java:135) at org.glassfish.grizzly.threadpool.AbstractThreadPool$Worker.doWork(AbstractThreadPool.java:564) at org.glassfish.grizzly.threadpool.AbstractThreadPool$Worker.run(AbstractThreadPool.java:544) at java.lang.Thread.run(Thread.java:722) Caused by: java.lang.reflect.InvocationTargetException at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.lang.reflect.Method.invoke(Method.java:601) at ca.uhn.fhir.rest.method.BaseMethodBinding.invokeServerMethod(BaseMethodBinding.java:194) ... 34 more Caused by: java.lang.NumberFormatException: For input string: "2.16.840.1.113883.3.239.23.21" at java.lang.NumberFormatException.forInputString(NumberFormatException.java:65) at java.lang.Long.parseLong(Long.java:441) at java.lang.Long.parseLong(Long.java:483) at ca.uhn.fhir.model.primitive.IdDt.getIdPartAsLong(IdDt.java:203) at ca.uhn.fhir.jpa.provider.JpaResourceProvider.getHistoryForResourceInstance(JpaResourceProvider.java:78) ... 39 more "/>
</issue>
</OperationOutcome>
This is low priority. When printing the contents of a resource using "FhirContext#newXmlParser().setPrettyPrint(true).encodeResourceToString()" several duplicate resources appear in the "contained" element when they should not be there.
I testing IGenericClient to create resource with some Chinese words as below:
String name = "測試醫院";
Organization org = new Organization();
org.setName(new String(name.getBytes(), "UTF-8")).addIdentifier("2.16.886.101.20003.20014.20006", "1531000001");
...
MethodOutcome mo = client.create().resource(org)
.prettyPrint().encodedXml().execute();
Console Log:
2014/12/11 18:01:58 ca.uhn.fhir.rest.client.interceptor.LoggingInterceptor interceptRequest
Client request body:
<Organization xmlns="http://hl7.org/fhir"><identifier><system value="2.16.886.101.20003.20014.20006"/><value value="1531000001"/></identifier><name value="測試醫院"/><telecom><value value="0912345678"/></telecom><location><reference value="[email protected]"/></location></Organization>
It success at http://fhirtest.uhn.ca/base/Organization?_id=6030
but the name of Organization is garbled. It seems reading by "ISO-8859-1".
Then I try to sent same xml by POSTMAN (a chrome plugin tool)
It success at http://fhirtest.uhn.ca/base/Organization?_id=6032
there is no garbled.
I try to modify class ca.uhn.fhir.rest.method.BaseHttpClientInvocationWithContents
entity = new StringEntity(contents, ContentType.create(contentType, "UTF-8"));
entity.setContentEncoding("UTF-8"); // add this line after new StringEntity
same result, Chinese word still become garbled.
Is the client issue or server issue? Thanks.
Valid precision for DateDt is YEAR,MONTH or DAY.
Initialization should check this.
If SECOND is giving, parsing has a problem and thows DataFormatException -> "Invalid date/time string (data type does not support SECONDS precision"
See the example:
http://www.hl7.org/implement/standards/fhir/encounter-examples.html
The subject reference should say reference:
{
"subject": {
"reference": "Patient/example"
}
}However, the JSON that HAPI generates says resource instead of reference:
{
"subject": {
"resource": "Patient/example"
}
}The XML correctly produces:
<subject>
<reference value="Patient/example"/>
</subject>This seems to occur for all references, regardless of resource. I think the culprit is ca.uhn.fhir.parser.JsonParser:295, where it is explicitly writing "resource". This was found in version 0.5
I made a search method for a resource provider with the following signature:
@Search
public List searchByName(
@OptionalParam(name="partof") ReferenceParam thePartOfId,
@OptionalParam(name="partof.name") StringParam thePartOfName,
) {
When calling the method from my annotation client and passing in values for both parameters i got the following exception:
HTTP 400 Bad Request: Multiple values detected for non-repeatable parameter 'partof'. This server is not configured to allow multiple (AND/OR) values for this param.
That's not such a big deal because my intention is to have the caller use only one of the parameters but not both. Although, when calling the method with only the second parameter supplied (i.e. "partof.name") the server mapped the value to the first parameter. Thus in the resource provider object the "partof" parameter was populated with the value that should have been mapped to the "partof.name" parameter.
As workaround I'm going to try using a parameter name of "_partof.name" instead. I have a feeling that should work but it's not the preferred approach.
RestfulServer has a public method setAddProfileTag which takes AddProfileTagEnum as an argument. However, AddProfileTagEnum has package visibility. The method and the enum should have the same visibility, public.
Binary content is discarded during xml parsing, because attribute check of ID is missing in BinaryResourceState.attributeValue(...) (private class of ParserState)
when I run GET http://fhirtest.uhn.ca/base/Organization
return 40 entries.
I find all entries does have active element .
then I try http://fhirtest.uhn.ca/base/Organization?active:missing
it return 0 instead of 40
http://www.hl7.org/implement/standards/fhir/narrative.html says "Note that contained Resources SHALL NOT have a narrative of their own."
However, it looks like the HAPI test server is trying to give them narrative.
For example, http://fhirtest.uhn.ca/base/Patient/cid:Patient-27
I have create a valueset resource,when I try to run
http://fhirtest.uhn.ca/base/ValueSet/3cb9a027-9e02-488d-8d01-952553d6be4e/_history
it return
<OperationOutcome>
<text>
<status value="empty"/>
<div>
No narrative template available for resource profile: http://hl7.org/fhir/profiles/OperationOutcome
</div>
</text>
<issue>
<severity value="error"/>
<details value="ca.uhn.fhir.rest.server.exceptions.InternalErrorException: Failed to call access method ca.uhn.fhir.rest.server.exceptions.InternalErrorException: Failed to call access method at ca.uhn.fhir.rest.method.BaseMethodBinding.invokeServerMethod(BaseMethodBinding.java:199) at ca.uhn.fhir.rest.method.HistoryMethodBinding.invokeServer(HistoryMethodBinding.java:162) at ca.uhn.fhir.rest.method.BaseResourceReturningMethodBinding.invokeServer(BaseResourceReturningMethodBinding.java:228) at ca.uhn.fhir.rest.method.HistoryMethodBinding.invokeServer(HistoryMethodBinding.java:1) at ca.uhn.fhir.rest.server.RestfulServer.handleRequest(RestfulServer.java:534) at ca.uhn.fhir.rest.server.RestfulServer.doGet(RestfulServer.java:141) at javax.servlet.http.HttpServlet.service(HttpServlet.java:687) at javax.servlet.http.HttpServlet.service(HttpServlet.java:790) at org.apache.catalina.core.StandardWrapper.service(StandardWrapper.java:1682) at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:344) at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:214) at org.ebaysf.web.cors.CORSFilter.handleNonCORS(CORSFilter.java:437) at org.ebaysf.web.cors.CORSFilter.doFilter(CORSFilter.java:172) at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:256) at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:214) at org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:316) at org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:160) at org.apache.catalina.core.StandardPipeline.doInvoke(StandardPipeline.java:734) at org.apache.catalina.core.StandardPipeline.invoke(StandardPipeline.java:673) at com.sun.enterprise.web.WebPipeline.invoke(WebPipeline.java:99) at org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:174) at org.apache.catalina.connector.CoyoteAdapter.doService(CoyoteAdapter.java:357) at org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:260) at com.sun.enterprise.v3.services.impl.ContainerMapper.service(ContainerMapper.java:188) at org.glassfish.grizzly.http.server.HttpHandler.runService(HttpHandler.java:191) at org.glassfish.grizzly.http.server.HttpHandler.doHandle(HttpHandler.java:168) at org.glassfish.grizzly.http.server.HttpServerFilter.handleRead(HttpServerFilter.java:189) at org.glassfish.grizzly.filterchain.ExecutorResolver$9.execute(ExecutorResolver.java:119) at org.glassfish.grizzly.filterchain.DefaultFilterChain.executeFilter(DefaultFilterChain.java:288) at org.glassfish.grizzly.filterchain.DefaultFilterChain.executeChainPart(DefaultFilterChain.java:206) at org.glassfish.grizzly.filterchain.DefaultFilterChain.execute(DefaultFilterChain.java:136) at org.glassfish.grizzly.filterchain.DefaultFilterChain.process(DefaultFilterChain.java:114) at org.glassfish.grizzly.ProcessorExecutor.execute(ProcessorExecutor.java:77) at org.glassfish.grizzly.nio.transport.TCPNIOTransport.fireIOEvent(TCPNIOTransport.java:838) at org.glassfish.grizzly.strategies.AbstractIOStrategy.fireIOEvent(AbstractIOStrategy.java:113) at org.glassfish.grizzly.strategies.WorkerThreadIOStrategy.run0(WorkerThreadIOStrategy.java:115) at org.glassfish.grizzly.strategies.WorkerThreadIOStrategy.access$100(WorkerThreadIOStrategy.java:55) at org.glassfish.grizzly.strategies.WorkerThreadIOStrategy$WorkerThreadRunnable.run(WorkerThreadIOStrategy.java:135) at org.glassfish.grizzly.threadpool.AbstractThreadPool$Worker.doWork(AbstractThreadPool.java:564) at org.glassfish.grizzly.threadpool.AbstractThreadPool$Worker.run(AbstractThreadPool.java:544) at java.lang.Thread.run(Thread.java:722) Caused by: java.lang.reflect.InvocationTargetException at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.lang.reflect.Method.invoke(Method.java:601) at ca.uhn.fhir.rest.method.BaseMethodBinding.invokeServerMethod(BaseMethodBinding.java:194) ... 40 more Caused by: java.lang.NumberFormatException: For input string: "3cb9a027-9e02-488d-8d01-952553d6be4e" at java.lang.NumberFormatException.forInputString(NumberFormatException.java:65) at java.lang.Long.parseLong(Long.java:441) at java.lang.Long.parseLong(Long.java:483) at ca.uhn.fhir.model.primitive.IdDt.getIdPartAsLong(IdDt.java:194) at ca.uhn.fhir.jpa.provider.JpaResourceProvider.getHistoryForResourceInstance(JpaResourceProvider.java:81) ... 45 more "/>
</issue>
</OperationOutcome>
I made a search method for a resource provider with the following signature:
@Search
public List searchByName(
@OptionalParam(name="partof") ReferenceParam thePartOfId,
@OptionalParam(name="partof.name") StringParam thePartOfName,
) {
When calling the method from my annotation client and passing in values for both parameters i got the following exception:
HTTP 400 Bad Request: Multiple values detected for non-repeatable parameter 'partof'. This server is not configured to allow multiple (AND/OR) values for this param.
That's not such a big deal because my intention is to have the caller use only one of the parameters but not both. Although, when calling the method with only the second parameter supplied (i.e. "partof.name") the server mapped the value to the first parameter. Thus in the resource provider object the "partof" parameter was populated with the value that should have been mapped to the "partof.name" parameter.
As workaround I'm going to try using a parameter name of "_partof.name" instead. I have a feeling that should work but it's not the preferred approach.
When the annotation client tries to call an instance level history operation on a resource provider, if the resource provider has a vread operation implemented then it seems
that the history operation does not get invoked, but the vread operation gets invoked instead. James, you can test this out using http://uhnveng10.uhn.ca:8080/svn/syseng/Java/cGTA-CVP/uhn-fhir-service/trunk/src/main/java/ca/uhn/fhir/client/DiagnosticReportClientExample.java
Just run the getAppGennedDiagnosticReportHistory method from this class and check the log file on the server side, you'll notice that the getDiagnosticReport method is being invoked instead (this is the method annotated with @READ(version=true)).
James,
I'm subclassing some of your classes to introduce some new behaviors. Some simple changes would help me greatly:
FhirContext - add a setRestfulClientFactory method.
BaseClient - elevate invokeClient method visibility from package to protected.
GenericClient - add a getFhirContext method
RestfulClientFactory - add a getFhirContext method
Thanks for considering these changes.
[A-Za-z0-9-.]{1,64}
..and JPA module should respect it.
When will the latest FHIR-Dev and DSTU be supported?
FHIR-Dev:
DeviceObservationReport has been deprecated in the latest FHIR Dev: http://hl7.org/implement/standards/FHIR-develop/resourcelist.html. The HAPI-FHIR-0.7 and HAPI-FHIR-0.8-SNAPSOT still contain this resource. I see it at https://github.com/jamesagnew/hapi-fhir/blob/master/hapi-tinder-plugin/src/main/resources/res/dev/deviceobservationreport-spreadsheet.xml. This spreadsheet specifies that it was saved on 2013-06-22.
FHIR-DSTU
The version in the pom, https://github.com/jamesagnew/hapi-fhir/blob/master/hapi-fhir-structures-dstu/pom.xml, shows FHIR 0.80. Is it for DSTU 1 (v0.0.80) or latest DSTU 1 (v0.0.82)?
When a read operation returns a resource the resource's logical id is not supplied in the response since the FHIR spec does not allow it. On the otherhand the java object for the resource does have a field for the logical id and it's set to blank/null in this situation. For completeness it would be nice to have this field populated, maybe add logic to the FHIR client to populate this field before passing the resource object back to the caller.
Hello,
we were able to run demo version of our radiology apps based on HAPI 0.3 under Tomcat-8, but we would like to be able to run it under Tomcat-6 since our existing cust PROD env uses Tomcat-6 to run other existing apps.
Please provide direction on how to do this.
Thank you
Bernard
when I run
POST http://fhirtest.uhn.ca/base/Practitioner
<?xml version="1.0" encoding="UTF-8"?>
<Practitioner
xmlns="http://hl7.org/fhir">
<text>
<status value="generated"/>
<div
xmlns="http://www.w3.org/1999/xhtml">Verify, Virgil. SSN:
 999999999
</div>
</text>
<identifier>
<label value="SSN"/>
<system value="http://hl7.org/fhir/sid/us-ssn"/>
<value value="999999999"/>
</identifier>
<name>
<use value="official"/>
<family value="Verify"/>
<given value="Virgil"/>
</name>
<telecom>
<system value="phone"/>
<value value="555-555-1008"/>
<use value="work"/>
</telecom>
<address>
<use value="home"/>
<line value="1008 Healthcare Drive"/>
</address>
<gender>
<coding>
<system value="http://hl7.org/fhir/v3/AdministrativeGender"/>
<code value="M"/>
</coding>
</gender>
<organization>
<reference value="Organization/hl7"/>
</organization>
</Practitioner>
it return
Status Code: 400 Bad Request
Connection: close
Content-Length: 137
Content-Type: text/plain;charset=ISO-8859-1
Date: Wed, 06 Aug 2014 09:04:32 GMT
Server: GlassFish Server Open Source Edition 4.0
X-Powered-By: HAPI FHIR 0.6-SNAPSHOT RESTful Server
access-control-allow-methods: GET, POST, PUT, DELETE
access-control-allow-origin: *
access-control-expose-headers: Content-Location
Resource Organization/hl7 not found, specified in path: Practitioner.organization (this is an invalid ID, must be numeric on this server)
I believe it would make for more usable API if the FhirValidator class would return some sort of ValidationResult object rather than returning void but throwing exceptions if there is a validation issue. Handling exceptions for something as generally expected as validation errors seems to create less code which is more difficult to follow. There is some good explanation here about why this is an anti-pattern.
If this was an intentional design decision then we will use the existing API. If you would like to see an alternative API I would be more than happy to create a pull request for adding a new API for validation errors.
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Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
Microsoft
Open source projects and samples from Microsoft.
Google
Google ❤️ Open Source for everyone.
Alibaba
Alibaba Open Source for everyone
D3
Data-Driven Documents codes.
Tencent
China tencent open source team.