haokuo Goto Github PK

flask-bootstrap

Ready-to-use Twitter-bootstrap for use in Flask.

free-programming-books

:books: Freely available programming books

free-programming-books-zh_cn

:books: 免费的计算机编程类中文书籍，欢迎投稿

freec-plot

Plotting outputs of Control-FREEC for targeting sequencing data

getting-started-with-genomics-tools-and-resources

Unix, R and python tools for genomics

ggplot

ggplot for python

ggrepel

:round_pushpin: Repel overlapping text labels away from each other.

h2o-tutorials

Tutorials and training material for the H2O Machine Learning Platform

icallsv

A Framework to call Structural Variants from NGS based datasets

jstest

some test codes

jvarkit

Java utilities for Bioinformatics

labs

Rmd source files for the HarvardX series PH525x

machinelearningtrick

Machine Learning Trick : GBDT_Feature Blending Stacking CascadeForest

macs

MACS -- Model-based Analysis of ChIP-Seq

mb

molecular barcode pipeline

methylation_analysis

DNA methylation workflow, from beta-values to signatures

mlbayesopt

R package to tune parameters for machine learning(Support Vector Machine, Random Forest, and Xgboost), using bayesian optimization with gaussian process

mrbam

Query Mutated Reads from a Bam

mutation-analysis

my-r

a small collection for my R scripts

ngs-pipeline

GATK and VARSCAN analysis pipeline

notedown

Markdown <=> IPython Notebook

notes-python

中文 Python 笔记

oncotator

pandas-cookbook

Recipes for using Python's pandas library

paradigm

PAthway Representation and Analysis by Direct Inference on Graphical Models

purecn

Copy number calling and variant classification using targeted short read sequencing

pybeeswarm

Beeswarm plots for python

pysamstats

A fast Python and command-line utility for extracting simple statistics against genome positions based on sequence alignments from a SAM or BAM file.

pytest