guangchuangyu / frog_tree Goto Github PK

Hi! i have done 2 cluster comparisons between 3 groups of patients. Want to merge the results for these 2 comparisons, but i get this warning message: Warning message: The plyr::rename operation has created duplicates for the following name(s): (Cluster)

Code:
merge_result(list(A_up= my_reacprevscontrol %>% filter(direction == "Up"), A_down= my_reacprevscontrol %>% filter(direction == "Down"), B_up= my_reacpostvspre %>% filter(direction == "Up"), B_down= my_reacpostvspre %>% filter(direction == "Down"))) %>% dotplot(., showCategory=200, title = "Reactome region-specific pathway enrichments") + facet_grid(~direction)

Any way to avoid this error message? Thank you!
V

thanks for the cool package. Unfortunately I haven't been able to reproduce any of the code in different examples adding images to trees (either own images or emojis).

The code in https://github.com/GuangchuangYu/frog_tree returns the following error (and warning):

"Error in grDevices::col2rgb(colour, TRUE) : invalid color name 'butt'
In addition: Warning message:
The plyr::rename operation has created duplicates for the following name(s): (size)"

The first code chunk in https://guangchuangyu.github.io/2017/05/phylomoji-with-ggtree-and-emojifont/ returns this error (and same thing for the rest of chunks):

"Error: x must be a string or a R connection"

best