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anndata

Annotated data.

awesome-multi-omics

List of software packages for multi-omics analysis

bioconda-recipes

Conda recipes for the bioconda channel.

chame

Chromatin analysis module

chrombpnet

Bias factorized, base-resolution deep learning models of chromatin accessibility (chromBPNet)

crispra_zga

Code for CRISPR activation screen with single-cell RNA-seq readout studying zygotic genome activation

dragonnfruit

A method for analyzing scATAC-seq experiments.

echinus

Get a gene expression table from transcript compatibility counts

general

The official registry of general Julia packages

git_btm2017

Example used for the git course given at the EMBL btm 2017

gtca

h5xx-datasets

Demo datasets managed with Git LFS

mcq

Multiplexed COVID-19 quantification

mofa

Multi-Omics Factor Analysis

mofaplus-shiny

Interactive MOFA+

mofax-dash

Interactive MOFA+ powered by mofax and Dash

mudata-feedstock

A conda-smithy repository for mudata.

muon-dockerfile

Dockerfile for muon

recommonmark

A markdown parser for docutils

single-cell-reading-list

A curated selection of blog posts on single-cell data analysis

singularity_training

SIngularity training

soupx

R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data

staged-recipes

A place to submit conda recipes before they become fully fledged conda-forge feedstocks

versioned-hdf5

Versioned HDF5

y2ave_seqspecs

Work in progress seqspecs for Y2AVE processing for IGVF