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Name: Gregory Sprenger
Type: User
Name: Gregory Sprenger
Type: User
pathogen agnostic general workflow for genome assembly of Illumina paired-end sequence data
Using public data to look at correlations between agents and precipitation.
Recreation of the web-based BLAST tool
Config files used to define parameters specific to compute environments at different Institutions
Docker containers for bioinformatic tools
Dragen for Docker
a re-packaging of the sankey plot function for kraken reports taken from pavian and sankeyD3 from Florian Breitwieser
Using PCR primers from Barragan et al. (2016) to see if they are able to detect all pathogenic, intermediate, and saprophytic Leptospira. Source = High Leptospira Diversity in Animals and Humans Complicates the Search for Common Reservoirs of Human Disease in Rural Ecuador
Assembly and binning of metagenomes
Reproducing results from a published metagenomic paper.
MiGA: Microbial Genomes Atlas
Synchronize/Import the viewing history from Netflix to trakt.tv
Code and files for the main nf-core website.
TaxTriage is designed in concordance with CDC recommendations to provide clinical environments the necessary tools to generate classification reports (using Kraken2) in a metagenomics scope. It is bundled with Nextflow to provide a seamless installation and usage experience.
Test data to be used for automated testing with the nf-core pipelines
Python package with helper tools for the nf-core community.
Perform average amino acid identity (AAI) on 2 or more proteomes.
Perform Average Nucleotide Identity (ANI) on FastA/Genbank files.
WARN: Repository has moved. Use the link below or link at the top of README to access the most up to date assembly pipeline!
WARN: This pipeline has been merged with wf-aai. Compute Percentage of Conserved Proteins (POCP) between FastA and GenBank files
Example template of a Nextflow workflow
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.