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prostate_lesion_detection

Model for the detection, segmentation, and classification of prostate lesions from mpMRI, using ProstateX data and Retina U-Net

prounet

Prostate U-net

pulsetile-angularjs

Leading edge modular UI framework for healthcare. Based on AngularJS. See documentation at http://docs.pulsetile.com/ See plugins at https://github.com/PulseTile-Plugins ##

py-rcpsp

Set of classes for comparing solutions to single and multiobjective resource constrained project scheduling problem.

pydata-medical-image

A Deep Learning talk+tutorial for medical image processing

pyhealth

A Python Library for Health Predictive Models

pylidc

An object relational mapping for the LIDC dataset using sqlalchemy.

pymeshlab

The open source mesh processing python library

pyonedark_qt_widgets_modern_gui

pyosirix

A python scripting environment for the OsiriX dicom browser

pyqtgraph

Fast data visualization and GUI tools for scientific / engineering applications

pyradlib

Radiotherapy Software Library

pyrtviewer

pyschedvisu

pySchedVisu is a tool to visualize the schedule of the scanners (PET/CT/SPECT) of the department of nuclear medicine at the CHUV

pysurvival

Open source package for Survival Analysis modeling

python-cookbook

Code samples from the "Python Cookbook, 3rd Edition", published by O'Reilly & Associates, May, 2013.

python-memory-management-course

Demo code exploring Python's memory models and collection algorithms from the Talk Python Training course.

python-pdfkit

Wkhtmltopdf python wrapper to convert html to pdf

python_dicom-rt-metricextractor

Process DICOM-RT files with a simple GUI to get specified metrics and a nice DVH plot

pytorchdigitalpathology

An implementation of Unet for pytorch designed for digital pathology segmentation

qdicomdiffer

A small cross-platform program to show DICOM metadata in a tree view, aswell as visually diff the metadata of two different DICOM files.

qtim_tutorials

Jupyter notebooks and other tutorials for medical imaging and deep learning, courtesy of the QTIM lab.

quannotate

qupath

QuPath - Open Source Digital Pathology

rad-collision

Platform for collision detection during treatment planning in radiotherapy

radiology_image_preprocessing_for_deep_learning

A Quick Guide on Radiology Image Pre-processing for Deep Learning Applications in Prostate Cancer Research

radiologyinformationsystem

Radiology information System, holds radiology specific text data. This system is use to Select a patient from the worklist that is automatically updated which appears on the modality monitor. Patient tracking and fetching previous patient images from PACS. RIS is also used for Creating radiologist reports, transcriptions, communicating with PACS to find images and film archiving. Each component talks to one another through Digital imaging and communication in medicine (DICOM) and Health Level-7 (HL7).

raystation-scripts

A collection of scripts which are used in our clinic to improve workflow with the radiotherapy treatment planning system RayStation.

registration

Image Registration

regseg

RegSeg is a simultaneous segmentation and registration method that uses active contours without edges (ACWE) extracted from structural images. The contours evolve through a free-form deformation field supported by the B-spline basis to optimally map the contours onto the data in the target space.