Comments (3)
gregmedlock
commented on July 25, 2024
Submission is complete but peak assignment file needs to be updated to be metabolights-compliant.
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gregmedlock
commented on July 25, 2024
There are additional issues in the metabolights sample files that I am getting feedback on to resolve (e.g. the formatting doesn't appear to support samples from multiple organisms; things aren't really built for co-culture studies). If you come across this and would like the raw spectra before I get things through metabolights, just shoot me a message and I will send the files over google drive.
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gregmedlock
commented on July 25, 2024
Raw NMR spectra are now available here: https://www.ebi.ac.uk/metabolights/MTBLS705/
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Related Issues (20)
- Add colorscale to abundance summary triangle plot
- Set all plot fonts to Arial and increase font size to minimize manual changes
- Overlay p-values on fig 1C, 1D
- Add subpanel labels for A,B, and C in Figure 5
- Fix Figure 4D typo
- Change all figure references to "strain" from "species"
- Add primer design scripts to this repository
- increase dashed line thickness in figure 2
- Edit Figure 4
- Edit Figure 5
- Increase point size in Figure 4 and 6 volcano plots
- Clean up experimental condition labels in subplots of Figure 7D
- Create an easy-to-use interface for ConYE so that users can test their own data
- Add HPC code used for gapfilling
- Add guide for "data parasites"
- Update readme with directory organization and file summaries
- Port notebook for generating growth curves to repository
- Add final publication figures
- Use consistent statistical threshold value when graphically representing rejection of null hypothesis
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