gregmedlock Goto Github PK

asf_characterization

First push

asf_interactions

Detection of growth- and metabolism-altering interactions within a defined microbiota

asf_recons

asf_scfa_quantification

Estimation of absolute concentrations for microbial products of metabolism from proton NMR data

bagm

Bayesian analysis of growth using metabolomics

bottom_up_ecology_functions

campy_murine_diets

cobrapy

COBRApy is a package for constraints-based modeling of biological networks

community_modeling

brewing community

crypto_2016

datascience_teaching

Collection of lecture materials for biomedical data science

dissertation

My written dissertation.

driven

Data-Driven Constraint-based analysis

flux_encoder

Trying to estimate elementary modes by applying an autoencoder to flux samples

gidi_research_tools

Tools for tracking research related to the UVA Global Infectious Diseases Institute (GIDI)

gimme_example

lncrna

mackinac

Mackinac: A bridge between ModelSEED and COBRApy

malnutrition_microbiota

basic relative abundance and PCoA plotting examples for 16S amplicon sequencing data.

matplotlib

matplotlib: plotting with Python

memote

memote – the genome-scale metabolic model test suite

metagenomics_interactions

A project involving inference of species-species interactions from amplicon-based metagenomics data.

metdraw

Automated map drawing for metabolic networks

minecraft_bio_mod

A minecraft mod meant to be used as a teaching tool and to expose children to various biology-related disciplines.

optlang

optlang - sympy based mathematical programming language

programmingassignment2

Repository for Programming Assignment 2 for R Programming on Coursera

psy_recon

Metabolic network reconstruction and analysis of Pseudomonas syringae

roadrunnerwork

Automatically exported from code.google.com/p/roadrunnerwork

scanpy

Single-Cell Analysis in Python. Scales to >1M cells.

scikit-learn

scikit-learn: machine learning in Python