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cantherm_old's Introduction

Copyright (c) 2002-2009 William H. Green and the CanTherm Team

Permission is hereby granted, free of charge, to any person obtaining a copy of
this software and associated documentation files (the "Software"), to deal in
the Software without restriction, including without limitation the rights to
use, copy, modify, merge, publish, distribute, sublicense, and/or sell copies of
the Software, and to permit persons to whom the Software is furnished to do so,
subject to the following conditions:

The above copyright notice and this permission notice shall be included in all
copies or substantial portions of the Software.

THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS
FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR
COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER
IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN
CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.


INTRODUCTION
------------

CANTHERM is written in python and calculates the thermodynamic properties
of stable molecules and high pressure limit rate coefficients for reactions.

For theory, strucutre of input file and examples the user is referred to the Manual.


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cantherm_old's Issues

Physical constants and conversion factors could be refined

Some of the physical constants and conversion factors seem to be off from the values I am familiar with by a fraction of a percent. I have already adjusted R (universal gas constant) in the following edit: http://github.com/gmagoon/CanTherm/commit/2a657aea4882337e1c54c8fcf059b32e303afce4 , but various other values could be refined as well. Other examples include:
4180 and 4.18 should be 4184 and 4.184 (J/cal)
6.023e23 should be 6.022...e23 (Avogadro's number)
1.6605e-27 is used sometimes whereas 1.67e-27 is used elsewhere (amu to kg?)

Chirality not taken into account

CanTherm doesn't easily allow to account for changes in chirality (mirror symmetry) between reactants and TS which can cause errors of a factor of two in the computed rate constant. It could also contribute to entropy (S) being off by a factor of R*ln(2).
I think this may be addressed (in a somewhat hackish manner) in the version of CanTherm that I use as a submodule with RMG-Java.

Calculations slow

CanTherm completes calculations in a matter of seconds, but I think there is potential for it to be done a lot faster. I'm guessing the limiting step is the diagonalization of the Hamiltonian matrix to get energy eigenvalues. Perhaps we could speed this up through cythonizing the code?

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