gofflab / developing_mouse_retina_scrnaseq Goto Github PK
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10x single cell RNA-seq data from the developing mouse retina
Hi Loyale,
Thanks for your nice work about mouse retina! I'd like to explore these data for my study, but I am confused with them.
➜ GSE118614 tree | grep E11
├── E11.fastq.gz
├── E11_S1_L001_R1_001.fastq.gz -> E11.fastq.gz
├── E11.sra
/software/cellranger-1.1.0/cellranger run --id=E11 --fastqprefix=E11 --fastqs=./ --transcriptome=/reference/mouse/mm10/GENCODEvM25.cellranger.1.1.0
and
/software/cellranger-3.0.2/cellranger count --id=E11 --fastqs=./ --sample=E11 --transcriptome=/reference/mouse/mm10/GENCODEvM25
May I know your command line about cellranger setting about these samples? Thanks a lot !
Regards,
guowei
Hi,
Thanks for the great work! I am writing to ask that as the paper is published, is this data publicly available to use?
Also, is the expression matrix after doublet removal?
Thanks,
Qingnan
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