Name: Glenn Hickey
Type: User
Company: Arenaria
Location: Canada
Blog: https://scholar.google.ca/citations?user=YM0669QAAAAJ&hl=en
I am a freelance software consultant, specializing in comparative genomics research. I work primarily on open source projects using C++ and Python, such as Cactus and vg. I have a PhD in Computer Science from McGill University.
My consulting company, Arenaria, has been in business since 2015. If you are interested in working together feel free to contact me (my first name dot my last name @arenaria.ca).
sg2vg
Prototype code for importing a Side Graph (from a GA4GH server) into a VG
sgexport
Some common code for converting into Side Graph format
snpbridge
Merge adjacent snps in a variant graph constructed from vcf, using genotype information in said vcf.
spr
Compute the exact Subtree Prune and Regraft (SPR) distance between pair of unrooted phylogenetic trees
sv-genotyping-paper
swagg
tabixpp
C++ wrapper to tabix indexer
taftools
playing around with some taf applications
tehmm
Prototype code for identification of transposable elements in annotated DNA sequence using a HMM.
toil
Python based pipeline management software for clusters that makes running recursive and dynamically scheduled computations straightforward. So far works with gridEngine, lsf, parasol and on multi-core machines.
toil-lib
A common library for functions and tools used in toil-based pipelines
toil-vg
Home of the UC Santa Cruz Computational Genomics Lab's Toil-based VG pipeline
ultrabubble_eval
Extract detailed ultra bubble stats from a vg graph
vcflib
a simple C++ library for parsing and manipulating VCF files, + many command-line utilities
vg
tools for working with variant graphs
vg2maf
pangenome graph (vg) to multiple alignment (maf)
vg2sg
wgasv
Scripts for studying SVs via graphs constructed from whole-genome-alignment
xg
xg0: a simpler xg index
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
Django
The Web framework for perfectionists with deadlines.
Laravel
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
Microsoft
Open source projects and samples from Microsoft.
Google
Google ❤️ Open Source for everyone.
Alibaba
Alibaba Open Source for everyone
D3
Data-Driven Documents codes.
Tencent
China tencent open source team.
