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cell_2017_tumor-and-microenvironment-evolution-during-immunotherapy-with-nivolumab

Code and additional processed data for manuscript "Tumor and Microenvironment Evolution during Immunotherapy with Nivolumab"; see for manuscript https://doi.org/10.1016/j.cell.2017.09.028 See also http://www.ioexplorer.org for interactive visuallization

cell_csf_scrna-seq

Single cell transcriptomics reveals cerebrospinal fluid immune dysregulation during healthy brain aging and cognitive impairment

cellid

Gene signature extraction and cell-identity recognition at individual cell level from single-cell RNA-seq.

celligner_ms

Code related to the Celligner manuscript

celloracle

This is the alpha version of the CellOracle package

cellphonedb

CellPhoneDB can be used to search for a particular ligand/receptor, or interrogate your own HUMAN single-cell transcriptomics data.

cellrank_heatmap

CellRank for directed single-cell fate mapping

cellrank_velocity

RNA velocity on (time-course) single-cell expression data

chatgpt_academic

科研工作专用ChatGPT拓展，特别优化学术Paper润色体验，支持自定义快捷按钮，支持markdown表格显示，Tex公式双显示，代码显示功能完善，新增本地Python工程剖析功能/自我剖析功能

chemopersistance

Scripts to analyze single-cell and bulk RNA & ChIP-seq of TNBC under drug treatment

chenhongyubio.github.io

CHY blog

clustifyr

Infer cell types in scRNA-seq data using bulk RNA-seq or gene sets

cnmf

Code and example data for running Consensus Non-negative Matrix Factorization on single-cell RNA-Seq data

codes-used-in-human-cell-landscape

Tools used in Human Cell Landscape(HCL)

covid19_2020

This repository contains scripts used for the analysis of our data and to generate figures in our work titled "Single-cell transcriptomic analysis of SARS-CoV-2 reactive CD4+ T cells"

crosstalker

R package to do the Ligand Receptor Analysis Visualization

cuimc-nyp_covid_autopsy_lung

data

Data shared by Martin-Villalba-lab at DKFZ, Heidelberg, Germany

doubletfinder

R package for detecting doublets in single-cell RNA sequencing data

dynamic-of-cancer-stem-like-cells-during-cholangiocarcinoma-progression-

Dynamic-of-cancer-stem-like-cells-during-cholangiocarcinoma-progression-

dynamo_artista

Axolotl Regenerative Telencehpalon Interpretation via Spatiotemporal Transcriptomic Atlas

ebook-gpt-translator

Enjoy reading with your favorite style.

eosinophils_scrnaseq

Codes for analyses in the titled "Active eosinophils regulate host defense and immune responses during intestinal inflammation"

epianeufinder

R package to detect breakpoints and assign somies to scATAC-seq data

escape

Easy single cell analysis platform for enrichment

genesorter

Feature Ranking in (possibly large) Clustered Single Cell Data

geo

geo-datasets

Scripts for preparing datasets in GeoQuery

ggplot2

An implementation of the Grammar of Graphics in R

graduation-thesis

The project documents the relevant data results and analysis procedures for the graduation thesis