gladelephant Goto Github PK

-

nextNEOpi: a comprehensive pipeline for computational neoantigen prediction

2019_cell_emergence-of-a-high-plasticity-cell-state-during-lung-cancer-evolution

Algorithms and code developed as part of the study described in Marjanovic et al.

2020_an-integrated-multi-omic-single-cell-atlas-of-human-b-cell-identity

An integrated multi-omic single cell atlas of human B cell identity

2020_nat-genet_pan-cancer-single-cell-rna-seq-identifies-recurring-programs-

Pan-cancer single-cell RNA-seq identifies recurring programs of cellular heterogeneity

2022_cell_the-single-cell-lung-cancer-atlas

Single-cell Lung Cancer Atlas with 1.2M cells

2022_nature_a-cellular-hierarchy-in-melanoma-uncouples-growth-and-metastasis

2022_nature_ningzhang_neutrophils_hcc

Codes for the scPLC project

2023_linghua_wang_tcell_tcellmap-

Codes used in pan-T cell analysis

2023_linghua_wang_tesla

Deciphering tumor ecosystems at super-resolution from spatial transcriptomics with TESLA

2023_nat-genetic_hpv_opscc_analysis

PMID: 37012457 Cellular states are coupled to genomic and viral heterogeneity in HPV-related oropharyngeal carcinoma

2023_nature_ra_atlas_citeseq

RA Synovial Single-cell Multimodal Cell Atlas

2023_nature_single-cell-spatial-landscapes-of-the-lung-tumor-immune-microenvironment

2023_nc_temporal_chromatin_accessibility_osteo

2023_science_pdac-progression

2024_nature_-

The scripts used for analyzing JAX mouse dataset

alra

Imputation method for scRNA-seq based on low-rank approximation

alra-paper

an-atlas-of-infiltrated-b-lymphocytes-in-breast-cancer

apoe-ad-age-atlas

Repo of code used to analyze data from Millet, Ledo et al., "An Exhausted-Like Microglial Population Accumulates in Aged and APOE4 Genotype Alzheimer’s Brains", published in Immunity (2023).

aucell

Programs in development and scripts for daily data processing

aucell_plottsne

AUCell: score single cells with gene regulatory networks

augur

Cell type prioritization in single-cell data

awesome-public-datasets

A topic-centric list of HQ open datasets.

awesome-r-learning-resources

A curated collection of free resources to help deepen your understanding of the R programming language. Updated regularly. Contributions encouraged via pull request (see contributing.md).

awesome-single-cell

Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.

b-

banovichlab

inferCNV示例

be-gim_comparison

book6_first-course-in-data-science

Book_6_《数据有道》 | 鸢尾花书：从加减乘除到机器学习；2024年继续增补，并大修大改两轮。纠错多的同学，有赠书感谢！

branchedgp

Branching Gaussian process