gfellerlab / modec Goto Github PK

Dear developers,

Hello. I have been using MoDec v 1.2 and I would like to know how the "Score" in the output file "Responsibilities/bestPepResp_....txt" is calculated. I couldn't find the calculation method in the original text. Additionally, could you explain the parameter "-S 0, --Salign 0"? I understand that it calculates the binding core offset starting from different positions, and setting it to zero assumes that the central amino acid of the peptide is the center. However, I would like to know how the calculation method for different offsets is related to the weights.

I look forward to your response. Thank you very much.