genomicsnx Goto Github PK

r-graph-catalog

All graphs in “Creating More Effective Graphs”, made with R package ggplot2.

r-pharma

R in Pharma

r4ra

Scripts to support publication: Deep Molecular Pathology Profiling of Synovial Tissue Biopsies in the R4RA Randomised Clinical Trial Identifies Predictive Signatures of Response/Resistance to Biologic Therapies in Rheumatoid Arthritis

rapids-single-cell-examples

Examples of single-cell genomic analysis accelerated with RAPIDS

rasusa

Randomly subsample sequencing reads to a specified coverage

rawgraphs-app

The missing link between spreadsheets and data visualization

rbokeh

R interface to Bokeh http://hafen.github.io/rbokeh/

rcav2

R package for robust clustering of single cell RNA sequencing data

rcharts

Interactive JS Charts from R

re-data

re_data - data quality framework

react-table

⚛️ Hooks for building fast and extendable tables and datagrids for React

reactable

Interactive data tables for R

reactr

React for R

recount

R package for the recount project

region_analysis

A python script used to annotate genomic intervals.

reproducibility_markers_in_covid19_preprints

rfgm

rFGeM: Co-regulation Network Inference using an efficient FGM Profiling

rforproteomics

Using R and Bioconductor packages for the analysis and comprehension of proteomics data.

rgreat

GREAT Analysis - Functional Enrichment on Genomic Regions

rhandsontable

A htmlwidgets implementation of Handsontable.js

riblast

RIblast is ultrafast RNA-RNA interaction prediction software based on seed-and-extension algorithm for comprehensive lncRNA interactome analysis

rinpharma_workshop_2021

river

R package for RIVER (RNA-Informed Variant Effect on Regulation)

rmarkdown

Dynamic Documents for R

rmats-dvr

rna-bloom

:hibiscus: lightweight transcriptome assembly for short reads and nanopore reads

rna-combine

RNA-seq data comprehensive data analysis toolbox

rna-seq

RNA-seq analysis scripts

rna-seq-analysis

RNAseq analysis notes from Tommy Tang

rna-seq-diff-exprn

RNA-Sequencing data differential expression analysis pipeline. Performs: genome coverage (via bedtools and HTSeq), generates Circos code and plots, differential expression (via DESeq and NOISeq), structural variant detection (e.g. fusion genes, via SVDetect) and differential exon usage (via DEXSeq).