Comments (5)
jasonwalker80
commented on August 16, 2024
For the raw WDL file:
https://bitbucket.gsc.wustl.edu/projects/LIMS/repos/compute-work-flow/browse/wdl/Compute/UnalignedToMarkedBam/work_flow.wdl?at=refs%2Fheads%2Fmaster&raw
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jasonwalker80
commented on August 16, 2024
@tmooney could you help point us to the WDL location in Bitbucket for the CCDG pipeline documented here:
https://confluence.gsc.wustl.edu/pages/viewpage.action?pageId=26968484
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tmooney
commented on August 16, 2024
The WDL for that one is here:
https://bitbucket.gsc.wustl.edu/projects/LIMS/repos/compute-work-flow/browse/wdl/Compute/UnalignedBamToBQSRandVCF/work_flow.wdl
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susannasiebert
commented on August 16, 2024
Which one of these two workflows is the one that we are interested in recreating?
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jasonwalker80
commented on August 16, 2024
From the meeting yesterday, it was decided that we should move forward with BQSR and CRAM support. So the latter, longer workflow, 'UnalignedBamToBQSRandVCF'.
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