Comments (1)
A similar issue exists in https://github.com/genome/analysis-workflows/blob/98fd710ff8b032efadeebf85563f4515f1864d40/definitions/subworkflows/cram_to_cnvkit.cwl We should check for other places using this construction, too!
from analysis-workflows.
Related Issues (20)
- Update biscuit QC scripts in bisulfite pipeline
- add padding to germline exome target region intervals HOT 1
- Validate 2.0 workflows
- New step to sort a merged BAM in the rnaseq.cwl workflow
- strandedeness_check tool shouldn't use an ENTRYPOINT in its docker image HOT 1
- strandness check rnaseq docker image HOT 1
- Add jigv for pre-computed IGV views in a clean HTML format HOT 1
- update germline workflows to produce genome vcfs and genotyped vcf
- Add -m and -d options to vt decompose step to avoid splitting HOT 1
- Problem with merge_bams HOT 4
- Gather input files page has broken image links HOT 1
- Should we pass Omni to BQSR?
- Location of FASTQ files HOT 1
- Build HCC1395 test input for CNVKit
- Pangenome: ATAC-seq Pipeline
- Pangenome: RNA-seq Pipeline Requirements HOT 1
- germline docm filter needs a decompose step
- How to run immuno.cwl pipeline HOT 1
- filter_vcf_depth.cwl problems handling DNPs? HOT 1
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