Giter Club home page Giter Club logo

gcszhn_pymol_plugin's Introduction

GCSZHN Pymol plugin

download and packaged "gcszhn_plugin" as a ZIP file, and install it as pymol plugin.

provided pymol command

  • copy_selection

Copy selection to clipboard.

  • save_by_objects

Save different objects as different files.

  • plddt_color

Plot plddt color by residue. The same color as Alphafold DB.

  • set_hydro_color_v2

Annotate hydrophobicity color of each residue. this function implmented by pymol.cmd.alter and pymol.cmd.spectrum.

  • set_hydro_color_v1

Annotate hydrophobicity color of each residue.

  • set_hydration_color

Annotate residue color according to hydration water molecular count.

  • get_sasa

Calculate solvent accessible surface area (SASA) for specific selection.

  • set_sasa_color

Annotated color by sasa.

  • load_dots

Load 3D object (*.ply) as dots.

  • load_ply

Load 3D object (*.ply) as mesh.

  • load_ply_with_patch

Load 3D object (*.ply) as mesh and annotate specific patch by provided patch list.

  • load_giface Load 3D object (*.ply) as giface.

  • extract_patch

Extract patch residues from model according to the patch mesh object.

gcszhn_pymol_plugin's People

Contributors

gcs-zhn avatar

Stargazers

 avatar  avatar  avatar

Watchers

 avatar

Recommend Projects

  • React photo React

    A declarative, efficient, and flexible JavaScript library for building user interfaces.

  • Vue.js photo Vue.js

    ๐Ÿ–– Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.

  • Typescript photo Typescript

    TypeScript is a superset of JavaScript that compiles to clean JavaScript output.

  • TensorFlow photo TensorFlow

    An Open Source Machine Learning Framework for Everyone

  • Django photo Django

    The Web framework for perfectionists with deadlines.

  • D3 photo D3

    Bring data to life with SVG, Canvas and HTML. ๐Ÿ“Š๐Ÿ“ˆ๐ŸŽ‰

Recommend Topics

  • javascript

    JavaScript (JS) is a lightweight interpreted programming language with first-class functions.

  • web

    Some thing interesting about web. New door for the world.

  • server

    A server is a program made to process requests and deliver data to clients.

  • Machine learning

    Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.

  • Game

    Some thing interesting about game, make everyone happy.

Recommend Org

  • Facebook photo Facebook

    We are working to build community through open source technology. NB: members must have two-factor auth.

  • Microsoft photo Microsoft

    Open source projects and samples from Microsoft.

  • Google photo Google

    Google โค๏ธ Open Source for everyone.

  • D3 photo D3

    Data-Driven Documents codes.