fusionworks / jbrowse-adam Goto Github PK

{
   "features":[
      {
         "name":"20FUKAAXX100202:1:23:4017:77368",
         "seq":"CAGCAGACAATAACAAGAGAATTATTAAGACTTAGAAAAAGACAATTCTTAATACAGAATTTCAAGGGGTGGATTGAGCAAGACTGGAGGCAAAACATCTT",
         "cigar":"101M",
         "flag":177,
         "insert_size":5317675,
         "map_qual":60,
         "ref_index":0,
         "mate_ref":"20",
         "mate_ref_index":0,
         "mate_start":15363274,
         "start":10045599,
         "end":10045700,
         "xs":0,
         "as":96,
         "rg":"group1",
         "nm":1,
         "qual":"38 39 37 38 39 38 38 38 38 38 37 38 38 38 38 39 38 39 38 38 38 39 38 38 40 38 38 39 38 37 38 39 36 37 31 35 38 38 38 39 38 38 38 38 38 39 38 38 39 38 38 38 38 37 38 39 37 38 38 39 39 38 38 38 37 35 37 37 36 38 37 37 38 39 38 37 39 37 38 37 39 37 37 38 38 37 37 39 37 37 37 37 37 37 37 37 37 37 36 37 35",
         "strand":-1,
         "seq_id":"20",
         "uniqueID":"20FUKAAXX100202:1:23:4017:77368_10045599"
      }
   ]
}

{
   "features":[
      {
         "start":13806041,
         "end":13806042,
         "seq_id":"20",
         "type":"SNV",
         "score":-10.0,
         "filter":{
            "values":[
               "PASS"
            ],
            "meta":{
               "description":"List of filters that this site has not passed, or PASS if it has passed all filters"
            }
         },
         "alternative_alleles":{
            "values":[
               "A"
            ],
            "meta":{
               "description":"VCF ALT field, list of alternate non-reference alleles called on at least one of the samples"
            }
         },
         "reference_allele":"G",
         "KGPROD":true,
         "RSPOS":"13806042",
         "SAO":"0",
         "VC":"SNV",
         "VP":"050000000005000014000100",
         "WGT":"1",
         "dbSNPBuildID":"134",
         "ASP":true,
         "KGPhase1":true,
         "SSR":"0",
         "GMAF":"0.0023",
         "description":"SNV G -> A",
         "genotypes":{

         },
         "uniqueID":"SNV_13806041_13806042"
      }
   ]
}