fursham-h / factr Goto Github PK
View Code? Open in Web Editor NEWfactR: Functional Annotation of Custom-assembled Transcripts in R
Home Page: https://fursham-h.github.io/factR/
License: Apache License 2.0
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Predicting NMD function
Hi, I'm using your tool for my analysis, when I use the function "predict NMD" I obtain the table with transcript, stop_to_lastEJ, num_of_downEJs, 3'UTR_length and is_NMD.
For my analysis I want to determine the specific PTC position in my novel isoforms.
Is it possible to implement another column in the output with the PTC position? Can I obtain this information from the custom_GTF and NMD_object?
Thanks for the help.
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