Example glue code for loading HDF5 data into Spark
This ipython notebook comes as a collaborative effort between Jeremy Freeman, Cyrille Rossant and Roman Valls to explore the idea exposed in a blog post written during the Neuroinformatics Without Borders event.
The idea is to invite the electrophysiology community to use high performance frameworks such as Thunder/Spark while using their already semi-stablished data format standards, such as KWIK.
As in readchunk method, hdf5 file is opened multiple times. I tried to open file once, and only read the content from the dataset. But it return error like "h5py/h5py/_objects.c: cinit() takes exactly 1 positional argument (0 given)". It seems that hdf5 dataset does not support direct parallel I/O without opening File first. Could you please offer me some advice? Thank you.
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