fran-romero-campero / attractor Goto Github PK

Describe the bug
Error appears when Multiple TF analysis results in no gene overlaps: "An error has occurred. Check your logs or contact the app author for clarification."

To Reproduce
Steps to reproduce the behavior:

1. Go to 'Multiple transcription factor analysis'
2. Select:
   PHYA ZT00
   CCA1 ZT02
   FHY ZT04
   PIF4 ZT04
   PIF5 ZT04
   CCA1 ZT14
3. Click on 'Gene Table'
4. See error

Expected behavior
A message saying that there is no overlap

Screenshots

Desktop (please complete the following information):

• OS: Windows 10
• Browser: Chrome
• Version 81.0.4044.129 (Official Build) (64-bit)

Describe the solution you'd like
Would it be possible to add comparisons against a custom user input list of ATG IDs?

Is your feature request related to a problem? Please describe.
I like the Venn diagram of gene overlaps feature. However, I am not able to choose which overlap I want to download as a table.

Describe the solution you'd like
Would it be possible for the user to click on the different gene sets from the different regions of the Venn diagram to download that group in particular?

Additional context
See https://bioinfogp.cnb.csic.es/tools/venny/ for an example

Is your feature request related to a problem? Please describe.
ATTRACTOR is based on several ChIPseq datasets. Right now it is not possible to do a bulk data retrieval of them, as it is for example in Mockler Diurnal.

Describe the solution you'd like
Could you please make it possible to download these datasets in simple tab delimited text files? Thank you!

Additional context
See http://diurnal.mocklerlab.org/about