fordanic / image-registration Goto Github PK

this is my startup file
addpath('path-to-this-repository')
setup_image_registration_repository();

load ('NORMA_002_S_0295.mat')
im = double(squeeze(D));
moving = im;

fixed=load('template_041_S_0898.mat')
im1 = double(squeeze(D));
fixed = im1;

[deformed, displacementField, displacementFieldInverse] = run_non_rigid_registration(moving, fixed, 'demons', 'add', 3, 0, [10], true, [1.5], true, [1.5])

But it is wrong!
here are the mistake:
Image size is too small for this resampling factor. No resampling.
Image size is too small for this resampling factor. No resampling.
Error using add_update_field_to_acc_field (line 53)
Unknown accumulation method

Error in registration_execute (line 365)
registration.displacementField =
add_update_field_to_acc_field(...

Error in run_non_rigid_registration (line 178)
registration_execute();

Error in startup (line 35)
[deformed, displacementField, displacementFieldInverse] =
run_non_rigid_registration(moving, fixed, 'demons', 'add', 3, 0,
[10], true, [1.5], true, [1.5])

Sorry!

I use demons for my registration on 3D data, I get a displacementfield which has 3 matrix, so it is simply add the displacementfield with moving, or it has some complex method. I see the function ba_interp3, but I can't understand it.
sorry to bother you! Thank you!

Hello,
I am new to image registration, and when I ran registration_example3d.m there is the error:

Error using pad (line 60)
First argument must be a string array, character vector, or cell array of character vectors.

Error in display_image (line 76)
imPlaneYX = pad(plane,[sz sz]);

Error in display_fixed_moving_warped (line 35)
display_image(fixed,1,'fixed','gamma',gamma)

Error in display_results_registration3d (line 46)
display_fixed_moving_warped(fixed,moving,deformed,gamma);

Error in registration_execute (line 455)
display_results_registration3d(...

Error in registration_example3d (line 215)
registration_execute();

I don't know how to fix it,Would you please help me?
Thank you very much!

Yesterday I ran the code successfully! But today the code have a error
I just put [deformed, displacementField, displacementFieldInverse] = run_non_rigid_registration(moving, fixed, 'demons', 'sum', 2, 0, [10], true, [1.5], true, [1.5])

then the error
Error using CUDA_non_rigid_registration3d (line 65)
CUDA_affine_registration3d is implemented as a mex-file. It has
not been compiled on this platform.

Error in run_non_rigid_registration (line 132)
[deformed, displacementField{1}, displacementField{2},
displacementField{3}] = ...

I did add dforsberg-cuda-7a242e0d5a4c and dforsberg-matlab_cuda-7877e5d85f5f toolboxes

I dont know why

Sorry to bother you, I want use it to registration with demons for 3D MRI data. Can you give me a example of how to use it?

Hello,
I am new to image registration, and when I ran registration_example3d.
when I repace the pad by padarray,there is the error:
Wrong use horzcat
The dimensions of the arrays to concatenate are inconsistent.

Error display_image (line 83)
imPlane = [imPlaneYX flipud(imPlaneYZ') flipud(imPlaneXZ')];

Error display_fixed_moving_warped (line 35)
Display_image(fixed,1,'fixed','gamma',gamma)

Error display_results_registration3d (line 46)
Display_fixed_moving_warped(fixed,moving,deformed,gamma);

Error registration_execute (line 455)
Display_results_registration3d(...

Error registration_example3d (line 215)
Registration_execute();
I don't know how to fix it,Would you please help me?
Thank you very much!