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bvcn-jupyter_base

JupyterLab 2.0 with offlinenotebook safety net and Visual Debugger for use via MyBInder.org by BVCN

bvcn-jupyter_rise

BVCN Jupyter base with RISE slideshow support added for use via MyBInder.org

by4741_yscrna-seq_suppl_data-binderized

Facilitating exploring a large table from Nadal-Ribelles et al 2019 PMID: 30718850 in your browser.

cairo-jupyter

Jupyter notebooks hosted via mybinder.org where cairo works

camb

Code for Anisotropies in the Microwave Background

cbr-accompmatz

Accompanying material for my circos-binder repo

chapter7

This repository contains a reproducible research compendium for the case study used in Chapter 7 of the book.

circos-binder

Run Circos software in a Jupyter environment served by MyBinder.org.

cl_demo-binder

A collection of demonstrations of useful resources for command line / Jupyter session manipulation of structure files.

cl_sq_demo-binder

A collection of demonstrations of useful resources for command line / Jupyter session manipulation of sequence files.

clausen_ribonucleotides

Analyze ribonucleotide incorporation data from Clausen et al. 2015 data using script `plot_5prime_end_from_bedgraph.py`.

clean_data_course_proj

course project for Coursera course "Getting and Cleaning Data"

cluster_analysis-binder

Demonstrating various clustering algorithms in Python, all provided actively useable via MyBinder.org.

cnssolve1pt21_docker

Dockerfile to build images that will compile CNSsolve 1.21.

communication_voila

a number of demonstrations of plots and ipywidgets widgets in notebooks and Voila

cufflinks_docker

Docker container for Cufflinks for Transcriptome assembly and differential expression analysis for RNA-Seq

cyverse-talkpatmatchcircosvice

Resource listing for accompanying Wayne's Cyverse talk on the PatMatch and Circos Binders and VICE apps.

dataframe2img

Styled Pandas dataframe saved as an image that will be viewable when a Jupyter notebook is reloaded.

dataframe2summary

Repo for demonstrating scripts that convert dataframes / data tables into summarized dataframes / data tables.

de_jong-jupyter

getting Peter De Jong attractor plotting working in a Jupyter notebook

diagrams_pkg-binder

Diagram as Code for prototyping cloud system architectures, served in sessions backed by MyBinder

docker-mac-linuxchromium

Dockerfile for a container for Linux chromium with all dependencies that can be tunneled to Mac Desktop

dockerfile-rstudio

to test building from a dockerfile presently

dockerfiles

organizational page for my various Dockerfiles I use on the desktop and on servers and on work stations

donut_plots_with_subgroups

Several generalized scripts for making donut plots that include subgroups using dataframes and text tables as input.

drag_legends-binder

Notebook to demonstrate draggable legends in Matplotlib.

epa

ericmjl-circos_binderized

Demonstrating how to activate a python 2 environment with `runtime.txt`

ffmpeg-python-binder

Based on idea [here](https://github.com/kkroening/ffmpeg-python/issues/147#issue-388764410).

fisherexact

Fisher exact test for mxn contingency table