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idigbio-ingestion-data-preparation

Scripts used to check the validity and consistency of the data before being imported by the iDigBio photo ingestion tool (for IZ collection photos)

Workflow and standards

  1. Clean up the spreadsheet that contains photo information (this file should be named with the prefix of the photos, e.g., dFMOK11-photoInfo.csv).
    • Save the original file with the -orig.csv suffix (e.g., dFMOK11-orig.csv).
    • Check the names of the headers at least: photo_number,photo_quality, phylum, previous_number and/or UFID
    • Make sure that the photo names match the names of the files (not including extension, e.g., dFMOK11-00001).
    • subset the data to only include photos rated 1
  2. make sure that the photo names have correct file name (e.g., dFMOK11-03891.JPG):
    • correct prefix, ideally: d+ExpeditionCode+Year (Year is optional but strongly recommended)
    • number of Digits (all should have 5 digits)
    • extension in UPPERCASE
  3. Generate the input CSV file using the iDigBio appliance
    • Select GUID = "{GUID prefix}{FileName}"
    • GUID prefix should always be: urn:catalog:flmnh:invertebrate zoology:images: (note the space between invertebrate and zoology, the s at the end of images, and the final :).
    • In CSV save path, include the name of the file. Use the same prefix as for the photos, followed by -toBeMatched.csv (e.g., dFMOK11-toBeMatched.csv)

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