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POMP is a POwerful Motif Pipeline which allows users to discover hundreds of motifs (such as using ENCODE motif database) with only one single run.

Home Page: https://bmcgenomics.biomedcentral.com/articles/10.1186/s12864-017-4340-z

License: BSD 3-Clause "New" or "Revised" License

R 50.56% Shell 24.74% Perl 24.71%

pomp--a-powerful-motif-discovery-pipeline's Introduction

POMP: a-Powerful-Motif-discovery-Pipeline

POMP is a POwerful Motif Pipeline which allows users to discover hundreds of motifs (such as using ENCODE motif database, which exceeded the HOMER4.9 allowed motif numbers) with only one single run.

This pipeline contains two folders as two parts:

Part one: POMP pipeline (./find-motifs)

Part two: RandomForest implementations in the paper (./RF_implementation)

Please click into the part you are looking for.

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