bash: "nocobbler on" gives errors with flow status and rerun function. about flowr HOT 2 CLOSED

Great thanks for the suggestion.

So basically including the set no cobbler option before trigger would make sure that rerun works properly ?

On Jul 17, 2015, at 11:50 AM, Samir B. Amin [email protected] wrote:

default bash options has noclobber set to off, allowing touch hello && echo hi > hello to work. If set -o | grep noclobber is on, then the same command will return error:

bash: hello: cannot overwrite existing file

Since user commands as well as flow torque.sh and other job scheduler files rely on > operator for job trigger, dependency and rerun functions, set -o | grep noclobber flag is worth checking before using > or do set +o noclobber && touch hello && echo hi > hello or force allow overwrite using touch hello && echo hi >| hello

PS: exitstat variable, currently at https://github.com/sahilseth/flowr/blob/master/inst/conf/torque.sh#L37 needs to be called just after {{{CMD}}} line, https://github.com/sahilseth/flowr/blob/master/inst/conf/torque.sh#L33

—
Reply to this email directly or view it on GitHub.

from flowr.

True! See bebe5c7

from flowr.