Comments (3)
Hi, I think the code in this package doesn't require modifications to run under Python 3, but currently the package depends on an old version of another package of mine (genometools) that maybe doesn't support Python 3 (maybe that's where the error comes from). I will fix this sometime this week, it's not very difficult.
Since I can't find the reference to urllib2 in my code right now, can you post the full error message and/or double check that it's not something in your own code? It's generally easy to fix this error:
http://stackoverflow.com/questions/2792650/python3-error-import-error-no-module-name-urllib2
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Hi Florian, that's great to hear.
Here is a gist including the error output:
https://gist.github.com/ruxi/9cc75e6e5023306dc56f1fe71b1ca58f
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Thanks for the error output. I just pushed version 0.3.2 to pypi, which should work with python 3.
My recommendation would be to uninstall genometools first:
pip uninstall genometools
And then install version 0.3.2
pip install pyaffy==0.3.2
Please let me know if the new version works for you.
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Related Issues (16)
- Estimation of `mu` parameter sometimes fails HOT 1
- Implement a Cython-based parser for the Command Console CEL format HOT 1
- Expand README HOT 1
- CEL file parser fails to parse non-ASCII characters in Version 4 format CEL files HOT 1
- Tests? HOT 2
- Make alpha background parameter value configurable
- Include link to toy example in README HOT 1
- Dependency not declared in setup.py (configparser) HOT 1
- cdfparser is not found. HOT 1
- Seems like CEL files must be gzipped beforehand? Why is that? HOT 2
- Error caused by inconsistent bytes/str
- File handle leak
- File "pyaffy/cdfparser.pyx", line 193, in pyaffy.cdfparser.parse_cdf AssertionError
- Issue with installation of pyaffy
- pip installation errors
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