flo-compbio Goto Github PK

2016-python-gene-expression-workshop

Data and Jupyter notebooks for the workshop "Gene Expression Analysis in Python" (2016)

best-readme-template

An awesome README template to jumpstart your projects!

conda

OS-agnostic, system-level binary package manager and ecosystem

enhance

ENHANCE: Accurate denoising of single-cell RNA-Seq data (Python implementation)

enhance-r

ENHANCE: Accurate denoising of single-cell RNA-Seq data (R implementation)

flo-compbio.github.io

galapagos-examples

Galapagos scRNA-Seq clustering examples

genometools

GenomeTools: Scripts and Classes for Working with Genomic Data

goparser

GOparser: A Python Framework For Working With Gene Ontology (GO) Terms and Annotations

gopca

GO-PCA: An Unsupervised Method to Explore Gene Expression Data Using Prior Knowledge

gopca-demos

GO-PCA demo notebooks

gopca-server

GO-PCA Web Server

magic

MAGIC (Markov Affinity-based Graph Imputation of Cells), is a method for imputing missing values restoring structure of large biological datasets.

moana-tutorials

Tutorials for how to use Moana in the form of Jupyter notebooks

molecular-cross-validation

Calibrate and compare methods for denoising single-cell RNA-seq data

monet

Monet: An open-source Python package for analyzing scRNA-Seq data using PCA-based latent spaces

monet-paper

Datasets used in analyses from the Monet paper

monet-tutorials

Tutorials on how to use Monet for analyzing single-cell RNA-Seq data

pyaffy

pyAffy: Processing raw data from Affymetrix expression microarrays in Python.

pyaffy-demos

Demos for the pyAffy Python package

pysamstats

A fast Python and command-line utility for extracting simple statistics against genome positions based on sequence alignments from a SAM or BAM file.

python-manylinux-demo

Demo project for building Python wheels for Linux with Travis-CI

scikit-learn

scikit-learn: machine learning in Python

singlecell

SingleCell: A Python/Cython Package for Processing Single-Cell RNA-Seq Data.

singlecell-clustering

Single-cell club clustering data

singlecellopenproblems

Formalizing and benchmarking open problems in single-cell genomics

star

RNA-seq aligner

test

test-page

test-page2

Build a Jekyll blog in minutes, without touching the command line.