fitzsimmonscm Goto Github PK

alphafold2_test

apaeval

desktop-tutorial

GitHub Desktop tutorial repository

epinano

Detection of RNA modifications from Oxford Nanopore direct RNA sequencing reads

fitzsimmonscm.github.io

Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes

lcb_practice

manuscript-templates

LaTeX templates for manuscripts. bioRxiv preprint and journal submission templates. For use on Overleaf.

minimap2

A versatile pairwise aligner for genomic and spliced nucleotide sequences

nanocompore_pipeline

Nextflow pipeline for nanocompore analysis

nanopolish

Signal-level algorithms for MinION data

ngs_onboarding

Recommended on-boarding tasks for lab members new to Biowulf and NGS analysis

poretools

a toolkit for working with Oxford nanopore data

preprint_templates

prokaryotic_trna

Analysis, figures, and data for the prokaryotic tRNA modification project

r2dtool

Annotates transcriptomic sites using a genome-aware annotation

rnaseq_nextflow

RNAseq Nextflow pilot for Batista Lab

rnaseqgene

RNA-seq workflow: gene-level exploratory analysis and differential expression

rosalind

Python practice with Project Euler, Rosalind, and others

skills-introduction-to-github

My clone repository

slamdunk

Streamlining SLAM-seq analysis with ultra-high sensitivity

tidytuesday

TidyTuesday and Rstats practice projects

tombo

Tombo is a suite of tools primarily for the identification of modified nucleotides from raw nanopore sequencing data.

workflowr_test

Repository to test the workflowr Rnotebook system