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resector

Algorithm to simulate resection surgery on brain MRI scans. Published in MICCAI 2020, extended in IJCARS.

resseg

RESSEG: automatic segmentation of postoperative brain cavities on 3D MRI using deep learning.

resseg-ijcars

Code, data and model for Pérez-García et al. 2021, "A self-supervised learning strategy for postoperative brain cavity segmentation simulating resections"

ressegijcars

Dummy, temporary repository. You are looking for https://github.com/fepegar/resseg-ijcars

rust-tests

scutoids

semiology-visualisation-tool

slicer

Multi-platform, free open source software for visualization and image computing.

slicer-blockmatching

3D Slicer module as a GUI for blockmatching, a robust registration tool

slicer-dataprobe-histology

slicer-niftyreg

slicer-update

A script I use to automatically update 3D Slicer every night

sliceranimation

3D Slicer module to animate objects using linear transforms

slicerepisurg

3D Slicer module to visualize the EPISURG dataset and segment postoperative brain resection cavities using deep learning.

slicerparcellation

3D Slicer modules for brain segmentation using deep learning.

slicerpytorch

This extension contains only a module with some tools to install PyTorch inside Slicer, using the best possible version.

slicertorchio

3D Slicer module for TorchIO.

spotify-bpm-splitter

App to split a Spotify list in children playlists sorted by tempo

staple

Python implementation of the STAPLE segmentation algorithm

svt-web

Examples that illustrate how to use 3D Slicer via Jupyter notebooks in Python

synacor-challenge

My solution to the Synacor Challenge

telegram-gpt-bot

Use ChatGPT with your voice (in any language) and Telegram.

telegram-transcribe-audios

Transcribe looong voice notes so you can read instead of listening.

test

tf2pt

tiny-diffusion

A minimal PyTorch implementation of probabilistic diffusion models for 2D datasets.

torchio

Medical imaging toolkit for deep learning

torchio-notebooks

typer

Typer, build great CLIs. Easy to code. Based on Python type hints.

unet

"pip install unet": PyTorch Implementation of 1D, 2D and 3D U-Net architecture.