fbuessen / spinparser Goto Github PK

I am facing an error message-

SpinParser | install bin/SpinParser --debugLattice examples/square-Heisenberg.xml
bin/SpinParser: error while loading shared libraries: libhdf5.so.103: cannot open shared object file: No such file or directory

I am using Linux lite.

Hello, when i install the package. i go through to the make test step. but some of them fails.

What should i do ?

by the way the Tornado python package is needed, which has not been mentioned in the installation.

Running tests...
Test project /root/soft/SpinParser/build
Start 1: CutoffDiscretizationTest
1/22 Test #1: CutoffDiscretizationTest ......... Passed 0.01 sec
Start 2: FrequencyDiscretizationTest
2/22 Test #2: FrequencyDiscretizationTest ...... Passed 0.01 sec
Start 3: GeometryTest
3/22 Test #3: GeometryTest ..................... Passed 0.01 sec
Start 4: InputParserTest
4/22 Test #4: InputParserTest .................. Passed 0.01 sec
Start 5: IntegratorTest
5/22 Test #5: IntegratorTest ................... Passed 0.01 sec
Start 6: LatticeTest
6/22 Test #6: LatticeTest ...................... Passed 0.02 sec
Start 7: SU2VertexSingleParticleTest
7/22 Test #7: SU2VertexSingleParticleTest ...... Passed 0.01 sec
Start 8: SU2VertexTwoParticleTest
8/22 Test #8: SU2VertexTwoParticleTest ......... Passed 0.02 sec
Start 9: TRIVertexSingleParticleTest
9/22 Test #9: TRIVertexSingleParticleTest ...... Passed 0.01 sec
Start 10: TRIVertexTwoParticleTest
10/22 Test #10: TRIVertexTwoParticleTest ......... Passed 0.03 sec
Start 11: XYZVertexSingleParticleTest
11/22 Test #11: XYZVertexSingleParticleTest ...... Passed 0.01 sec
Start 12: ValueBundleTest
12/22 Test #12: ValueBundleTest .................. Passed 0.01 sec
Start 13: XYZVertexTwoParticleTest
13/22 Test #13: XYZVertexTwoParticleTest ......... Passed 0.02 sec
Start 14: LoadManagerTest
14/22 Test #14: LoadManagerTest ..................***Failed 0.04 sec
Start 15: referenceFailScriptedTest
15/22 Test #15: referenceFailScriptedTest ........ Passed 3.12 sec
Start 16: reference1ScriptedTest
16/22 Test #16: reference1ScriptedTest ...........***Failed 8.58 sec
Start 17: reference2ScriptedTest
17/22 Test #17: reference2ScriptedTest ...........***Failed 5.96 sec
Start 18: reference3ScriptedTest
18/22 Test #18: reference3ScriptedTest ...........***Failed 3.10 sec
Start 19: checkpointScriptedTest
19/22 Test #19: checkpointScriptedTest ...........***Failed 25.05 sec
Start 20: deferScriptedTest
20/22 Test #20: deferScriptedTest ................***Failed 24.90 sec
Start 21: pythonObsScriptedTest
21/22 Test #21: pythonObsScriptedTest ............***Failed 3.01 sec
Start 22: MPIScriptedTest
22/22 Test #22: MPIScriptedTest ..................***Failed 21.79 sec

64% tests passed, 8 tests failed out of 22

Total Test time (real) = 95.75 sec

The following tests FAILED:
14 - LoadManagerTest (Failed)
16 - reference1ScriptedTest (Failed)
17 - reference2ScriptedTest (Failed)
18 - reference3ScriptedTest (Failed)
19 - checkpointScriptedTest (Failed)
20 - deferScriptedTest (Failed)
21 - pythonObsScriptedTest (Failed)
22 - MPIScriptedTest (Failed)
Errors while running CTest
make: *** [Makefile:130: test] Error 8
root@iZ8vb5v9kc5sn4erj1qoftZ:~/soft/SpinParser/build#

I am trying to implement fisher lattice using Spinparser.(https://journals.aps.org/prb/abstract/10.1103/PhysRevB.102.224404)
Lattice definition that i used:
[unitcell name="fisher"]
[primitive x="1" y="0" z="0" /]
[primitive x="0" y="1" z="0" /]
[primitive x="0" y="0" z="1" /]

<site x="-1/3" y="0" z="0" />
<site x="0" y="-1/3" z="0" />
<site x="1/3" y="0" z="0" />
<site x="0" y="1/3" z="0" />

<bond from="0" to="1" da0="0" da1="0" da2="0" />
<bond from="1" to="2" da0="0" da1="0" da2="0" />
<bond from="2" to="3" da0="0" da1="0" da2="0" />
<bond from="3" to="0" da0="0" da1="0" da2="0" />
<bond from="2" to="0" da0="1" da1="0" da2="0" />
<bond from="3" to="1" da0="0" da1="1" da2="0" />

[/unitcell]

The unit cell that i am taking is:

The error message is:

Hi,

I am facing some issues while plotting structure factor plots in spin-flip and non-spin-flip channels.
Primarily I want to plot them with the weight factor on the global basis.

But when I am performing the transformation, the components are no longer just strings they are picking some pre-factors, but in getStructureFactor, the components can only take strings.

For reference, I am attaching the transformation equation and the transformation matrix.
It will be of great help if you let me know if there is some better way to post-process the data file.

Hi, I did all the steps in the installation of your document. but it failed at the step
cmake -DCMAKE_BUILD_TYPE=Release -DCMAKE_INSTALL_PREFIX=../install ../SpinParserSource

Here， i pasted the error message.

-- The C compiler identification is GNU 9.4.0
-- The CXX compiler identification is GNU 9.4.0
-- Check for working C compiler: /usr/bin/cc
-- Check for working C compiler: /usr/bin/cc -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Detecting C compile features
-- Detecting C compile features - done
-- Check for working CXX compiler: /usr/bin/c++
-- Check for working CXX compiler: /usr/bin/c++ -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Found Boost: /usr/lib/x86_64-linux-gnu/cmake/Boost-1.71.0/BoostConfig.cmake (found suitable version "1.71.0", minimum required is "1.71") found components: regex thread system program_options filesystem timer date_time unit_test_framework
-- HDF5: Using hdf5 compiler wrapper to determine C configuration
-- Found HDF5: /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so;/usr/lib/x86_64-linux-gnu/libpthread.so;/usr/lib/x86_64-linux-gnu/libsz.so;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/libdl.so;/usr/lib/x86_64-linux-gnu/libm.so (found version "1.10.4") found components: C
-- Found OpenMP_C: -fopenmp (found version "4.5")
-- Found OpenMP_CXX: -fopenmp (found version "4.5")
-- Found OpenMP: TRUE (found version "4.5")
CMake Error in /root/soft/SpinParser/build/CMakeFiles/CMakeTmp/CMakeLists.txt:
Imported target "MPI::MPI_C" includes non-existent path

"/root/soft/SpinParser/SpinParserSource/'/opt/intel/oneapi/mpi/2021.1.1/include'"

in its INTERFACE_INCLUDE_DIRECTORIES. Possible reasons include:

• The path was deleted, renamed, or moved to another location.

• An install or uninstall procedure did not complete successfully.

• The installation package was faulty and references files it does not
  provide.

CMake Error in /root/soft/SpinParser/build/CMakeFiles/CMakeTmp/CMakeLists.txt:
Imported target "MPI::MPI_C" includes non-existent path

"/root/soft/SpinParser/SpinParserSource/'/opt/intel/oneapi/mpi/2021.1.1/include'"

in its INTERFACE_INCLUDE_DIRECTORIES. Possible reasons include:

• The path was deleted, renamed, or moved to another location.

• An install or uninstall procedure did not complete successfully.

• The installation package was faulty and references files it does not
  provide.

CMake Error at /usr/share/cmake-3.16/Modules/FindMPI.cmake:1194 (try_compile):
Failed to generate test project build system.
Call Stack (most recent call first):
/usr/share/cmake-3.16/Modules/FindMPI.cmake:1245 (_MPI_try_staged_settings)
/usr/share/cmake-3.16/Modules/FindMPI.cmake:1505 (_MPI_check_lang_works)
CMakeLists.txt:29 (find_package)

-- Configuring incomplete, errors occurred!
See also "/root/soft/SpinParser/build/CMakeFiles/CMakeOutput.log".
See also "/root/soft/SpinParser/build/CMakeFiles/CMakeError.log".

Hi, i get an error when using SpinParser. I defined the 3 rd nn bonds in honeycomb lattice as,

<primitive x="3/2" y="sqrt(3)/2" z="0" />
<primitive x="3/2" y="-sqrt(3)/2" z="0" />
<primitive x="0" y="0" z="1" />

<site x="0" y="0" z="0" />
<site x="1" y="0" z="0" />

<bond from="0" to="1" da0="0" da1="0" da2="0" />
<bond from="1" to="0" da0="1" da1="0" da2="0" />
<bond from="1" to="0" da0="0" da1="1" da2="0" />
<bond from="1" to="0" da0="1" da1="1" da2="0" />
<bond from="1" to="0" da0="1" da1="-1" da2="0" />
<bond from="1" to="0" da0="-1" da1="1" da2="0" />

after i defined the model.xml. I try the --debugLattice. there goes with error:

[0.580380][I] Generated exponential frequency discretization with 64 values
[0.580485][I] Generated exponential cutoff discretization with 422 values
[0.586340][I] Building lattice spin model...
[0.587404][I] ...finding lattice parametrization
[0.587683][E] Caught exception: [InternalError]: Lattice symmetry calculation has failed. (Deviation of symmetry transformed site [n1] from target [c1] is 1.000000, should be zero)

Could you please tell me what does this error mean and is there anything wrong in my definition of the Lattice ?
Thank you!

Hi,

I was trying to implement pyrochlore with third nearest neighbour interactions. ( J3 interactions are of two types, I have labelled them as j3a and j3b).
The code is working fine for j3a=j3b, but if I take j3a =/ j3b, it's showing an error message "Lattice symmetry calculation has failed. (Internal error. Could not establish identity as a valid symmetry operation)".

My j3 interactions are::

[model name="pyrochlore-heisenberg-j3"]

    <interaction parameter="j3a" from="0,0,0,0" to="0,0,1,0" type="heisenberg" />
<interaction parameter="j3a" from="0,0,0,0" to="0,1,0,0" type="heisenberg" />
<interaction parameter="j3a" from="0,0,0,0" to="1,0,0,0" type="heisenberg" />
<interaction parameter="j3b" from="0,0,0,0" to="0,-1,1,0" type="heisenberg" />
<interaction parameter="j3b" from="0,0,0,0" to="-1,1,0,0" type="heisenberg" />
<interaction parameter="j3b" from="0,0,0,0" to="-1,0,1,0" type="heisenberg" />

<interaction parameter="j3a" from="0,0,0,1" to="0,0,1,1" type="heisenberg" />
<interaction parameter="j3a" from="0,0,0,1" to="0,1,0,1" type="heisenberg" />
<interaction parameter="j3a" from="0,0,0,1" to="1,0,0,1" type="heisenberg" />
<interaction parameter="j3b" from="0,0,0,1" to="0,-1,1,1" type="heisenberg" />
<interaction parameter="j3b" from="0,0,0,1" to="-1,1,0,1" type="heisenberg" />
<interaction parameter="j3b" from="0,0,0,1" to="-1,0,1,1" type="heisenberg" />

<interaction parameter="j3a" from="0,0,0,2" to="0,0,1,2" type="heisenberg" />
<interaction parameter="j3a" from="0,0,0,2" to="0,1,0,2" type="heisenberg" />
<interaction parameter="j3a" from="0,0,0,2" to="1,0,0,2" type="heisenberg" />
<interaction parameter="j3b" from="0,0,0,2" to="0,-1,1,2" type="heisenberg" />
<interaction parameter="j3b" from="0,0,0,2" to="-1,1,0,2" type="heisenberg" />
<interaction parameter="j3b" from="0,0,0,2" to="-1,0,1,2" type="heisenberg" />

<interaction parameter="j3a" from="0,0,0,3" to="0,0,1,3" type="heisenberg" />
<interaction parameter="j3a" from="0,0,0,3" to="0,1,0,3" type="heisenberg" />
<interaction parameter="j3a" from="0,0,0,3" to="1,0,0,3" type="heisenberg" />
<interaction parameter="j3b" from="0,0,0,3" to="0,-1,1,3" type="heisenberg" />
<interaction parameter="j3b" from="0,0,0,3" to="-1,1,0,3" type="heisenberg" />
<interaction parameter="j3b" from="0,0,0,3" to="-1,0,1,3" type="heisenberg" />   

[/model]

I am unable to link Mathematica with Spinparser, I am facing following error.

Hello Finn,
May I know if it is possible to generate spin configurations snapshots at different frequency as well as for the ground state?

Thanks for your help.