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Pindel can detect breakpoints of large deletions, medium sized insertions, inversions, tandem duplications and other structural variants at single-based resolution from next-gen sequence data. It uses a pattern growth approach to identify the breakpoints of these variants from paired-end short reads.

License: GNU General Public License v3.0

Perl 2.44% Dockerfile 0.04% Makefile 0.31% Shell 0.16% C++ 56.72% C 0.09% SystemVerilog 38.56% Python 1.68%

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