jupyter-stack's Introduction

jupyter-stack

jupyter-stack is a my personal maintained Jupyter Docker Stack image for use on my self-hosted server

TODO

Update WORKDIR (WORKDIR "/home/$NB_USER/work)
Install and configure plugins and theming

overrides.json
{
  "@jupyterlab/apputils-extension:themes": {
    "theme": "Rahlir Gruvbox"
  }
}

conda requirements

RUN conda install --quiet --yes \
    jupyter \
    jupyter-console \
    jupyterlab==1.2.7 # pin for upstream conflict w/ jupyterlab_vim \
    numpy \
    pandas \
    scipy \
    sympy \
    matplotlib \
    bokeh \
    ipympl \
    pandoc \
    dask_labextension \
    && \
    conda clean --all -f -y && \
    fix-permissions "${CONDA_DIR}" && \
    fix-permissions "/home/${NB_USER}"

RUN conda install -c conda-forge nodejs
RUN conda install --quiet --yes jupyter_contrib_nbextensions && \
    jupyter contrib nbextension install --user && \
    jupyter nbextension enable --py widgetsnbextension && \
    jupyter nbextension enable hinterland/hinterland
RUN jupyter labextension install -y --clean @jupyter-widgets/jupyterlab-manager && \
    jupyter-matplotlib && \
    dask-labextension && \
    jupyterlab_vim && \
    @rahlir/theme-gruvbox

##### ##### ##### ##### ##### ##### ##### #####
##### JUPYTER SETTINGS                    #####
##### ##### ##### ##### ##### ##### ##### #####
RUN mkdir -p $CONDA_DIR/share/jupyter/lab/settings
COPY overrides.json $CONDA_DIR/share/jupyter/lab/settings/

Update testing suite (docs)
Reduce image size (currently > 1.5 GB) by building from Alpine (base Dockerfile, apk pkgs)

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jupyter-stack's Issues

All jupyter processes hang when trying to run

Problem:
When opening a new notebook or console, neither process returns. Investigate run-one-constantly and why there are so many similar processes.

jovyan@1d9d3fb38c46:~$ ps uax
USER       PID %CPU %MEM    VSZ   RSS TTY      STAT START   TIME COMMAND
jovyan       1  0.4  0.0   2500   588 ?        Ss   20:32   0:00 tini -g -- start-notebook.sh --LabApp.token=''
jovyan       6  0.0  0.1   2612  1788 ?        S    20:32   0:00 /bin/sh -e /usr/bin/run-one-constantly jupyter lab --LabApp.token=''
jovyan      18  0.0  0.0   5676   776 ?        S    20:32   0:00 flock -xn /home/jovyan/.cache/run-one/7db878f606f96ea6b0b7d260af8c2232 jupyter lab --LabApp.to
jovyan      19 20.4  6.3  71868 63808 ?        S    20:32   0:01 /opt/conda/bin/python3.8 /opt/conda/bin/jupyter-lab --LabApp.token=''
jovyan      43  1.0  0.3   7240  3928 pts/0    Ss   20:32   0:00 /bin/bash
jovyan      51  0.0  0.3   8880  3296 pts/0    R+   20:32   0:00 ps uax

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