Comments (6)
Run caper init sherlock
.
from caper.
I tried already, but it did not work
'~ % Run caper init sherlock
zsh: command not found: Run'
Instead, I tried local, it did work. Do you think it's possible to run the pipeline on my mac (I have 4 samples/ATAC-seq data) or is better to use sherlock
thank you
from caper.
Please use Bash (not zsh).
Mac will not work with a full sample due to lack of resources. It will work with subsampled test samples though.
from caper.
zsh is the default mode of MacOS.
Yes, I'm planning to use Bash, however, I'm not able to deploy/initialize Caper on sherlock ! I can not tell where the error is ! do you know the bash command to initialize Caper either locally or on sherlock ?
Thank you
from caper.
Run caper init sherlock
You should not have Run
there. I just installed zsh
on my computer and tested it. It worked fine. Run caper init sherlock
.
from caper.
Yes, indeed it did work. I thought 'Run' was part of the command line.
Thank you
from caper.
Related Issues (20)
- caper init slurm not working HOT 6
- Newer cromwell versions HOT 2
- changes to sge_resource_param in config file don't make it through to backend.conf HOT 2
- Missing `engine` in gcs configuration HOT 1
- cromwell works, caper doesn't
- Relative paths to data files are not accessible by Singularity containers HOT 4
- Normalization
- Error when specifying --slurm-leader-job-resource-param HOT 1
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- caper halted
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- Consider increasing minimum requirement of PyYAML to 6.0.1 HOT 2
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- --slurm-extra-param: expected one argument HOT 1
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