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leepc12 avatar leepc12 commented on August 23, 2024

Run caper init sherlock.

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Kmrouj avatar Kmrouj commented on August 23, 2024

I tried already, but it did not work
'~ % Run caper init sherlock
zsh: command not found: Run'

Instead, I tried local, it did work. Do you think it's possible to run the pipeline on my mac (I have 4 samples/ATAC-seq data) or is better to use sherlock
thank you

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leepc12 avatar leepc12 commented on August 23, 2024

Please use Bash (not zsh).
Mac will not work with a full sample due to lack of resources. It will work with subsampled test samples though.

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Kmrouj avatar Kmrouj commented on August 23, 2024

zsh is the default mode of MacOS.
Yes, I'm planning to use Bash, however, I'm not able to deploy/initialize Caper on sherlock ! I can not tell where the error is ! do you know the bash command to initialize Caper either locally or on sherlock ?
Thank you

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leepc12 avatar leepc12 commented on August 23, 2024

Run caper init sherlock You should not have Run there. I just installed zsh on my computer and tested it. It worked fine. Run caper init sherlock.

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Kmrouj avatar Kmrouj commented on August 23, 2024

Yes, indeed it did work. I thought 'Run' was part of the command line.
Thank you
Screen Shot 2020-04-02 at 8 57 51 AM

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