Comments (2)
This looks like an in-memory
HSQLDB issue. Can you add --db file --file-db /YOUR/HOME/temp/dir/caper_hsqldb
to caper run
and try again?
/YOUR/HOME/temp/dir/caper_hsqldb
will be a prefix for temporary files of Cromwell's file based metadata database. Can use any temporary directory.
from caper.
This looks like an
in-memory
HSQLDB issue. Can you add--db file --file-db /YOUR/HOME/temp/dir/caper_hsqldb
tocaper run
and try again?/YOUR/HOME/temp/dir/caper_hsqldb
will be a prefix for temporary files of Cromwell's file based metadata database. Can use any temporary directory.
Thanks for your reply! It is indeed that issue. We figured out an alternative using caper server
while running a mysql server, writing the metadata database to the mysql server.
from caper.
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