A Rust-based genomics tool for processing BAM files and performing operations on chromosomal regions.
- Processes BAM files, aggregates chromosomal data.
- Efficient serialization with "bincode" crate.
- Includes
bin.sh
script for seamless data handling.
In the bin.sh
script, there is a configuration section where you need to set up the data directory. Locate the following lines and customize them based on your project structure:
# Define the data directory
DATA_DIR="$DIR/"
# Define the centromeres file path
CENTROMERES="$DIR/"
# Clone the repository
git clone https://github.com/elforjani13/bamtool.git
cd bamtool
# Build the Rust program
cargo build
# Run the Bash script
./bin.sh [sample_dir] [output_dir]