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Voltages are ~x10 higher than expected when using a sigma =2 for all elements. Setting it to 2.0001 works.
load_sigma_vector_binary gives expected values of 2, so likely inside the solver somewhere.

This was a day of my life you took away from me markus, and I want it back

In particular, this means:

• Zoltan3.83
• Dune2.6

Since Dune has a full CMake build process, I am trying to replace the Automake, sh INSTALL process with a coherent CMake one for a dune-peits module.

Kirill had something weird where the X, Y and Z coordinates of the mesh encopassed the origin, that a whole section of the result was all fucked up. Translating the coordinates of the mesh so they were all positive fixed this...

Fails when running sh INSTALL with the following error

/usr/include/c++/7/bits/c++0x_warning.h:32:2: error: #error This file requires compiler and library support for the ISO C++ 2011 standard. This support must be enabled with the -std=c++11 or -std=gnu++11 compiler options.
 #error This file requires compiler and library support \

Its probably related to the newer GCC, there are so many places where build and compiler flags are set that I am unsure where to set -std=c++11 or -std=gnu++11

Develop a Dockerfile to set up the full environment including PETSc, Zoltan and dune on Ubuntu18 to get the latest LTR updates.
What needs to be included next:

• metis
• parmetis

Hi there,
I am trying to prepare a call the PEITS solver from octave, where an input is the EIDORS fmdl structure (see fmdl_cyl.mat in the attached zip file) with cylinder equipped by circular electrodes. After executing my code (see call_peits.m in the attached zip file), I have received the following error:

octave:8> out = call_peits('JOB1'); Warning: Unable to read parameter file '../data/parameter' Error: ParameterNotFound [map:/home/jc/PEITS_root/PEITS/dune-fem-1.4.0/dune/fem/io/parameter.hh:734]: Parameter 'electrode.use_node_assignment' not found. Warning: Unable to read parameter file '../data/parameter' Error: ParameterNotFound [map:/home/jc/PEITS_root/PEITS/dune-fem-1.4.0/dune/fem/io/parameter.hh:734]: Parameter 'electrode.use_node_assignment' not found. ...

I would like to ask for advice. Are all parameters in the right place?
In a summary, I have the following files in the directory PEITS_root/PEITS/data/

standardparams
parameter
current_protocol_3Dcyl.txt
electrode_nodes_3Dcyl.txt
param_3Dcyl
3Dcyl.dgf

which are also part of the attached zip file: call_peits.zip

Thank you in advance for any advice.

Installing on windows system for linux which doesnt have everything installed as normal ubuntu highlighted that some other packages were needed:
pkg-config

its still not compiling so there is something else too

when making zoltan

Makefile:1053: recipe for target 'install-exec-hook' failed
make[3]: *** [install-exec-hook] Error 255
make[3]: Leaving directory '/home/james/PEITS_root/Zoltan_v3.8/BUILD_DIR'
Makefile:916: recipe for target 'install-exec-am' failed
make[2]: *** [install-exec-am] Error 2
make[2]: Leaving directory '/home/james/PEITS_root/Zoltan_v3.8/BUILD_DIR'
Makefile:863: recipe for target 'install-am' failed
make[1]: *** [install-am] Error 2
make[1]: Leaving directory '/home/james/PEITS_root/Zoltan_v3.8/BUILD_DIR'
Makefile:534: recipe for target 'install-recursive' failed
make: *** [install-recursive] Error 1

Will the PEITS installation package be updated? There are always errors in the installation, and some packages have failed.

Set the .yaml accordingly.

dune_exporter.m currently has this bit of code:

fprintf(paramfile, ['electrode.nodes: ../data/electrode_nodes_TA052_meters']); % If electrodes should be defined by nodes, change this file

fprintf(paramfile, ['surface.coordinates: ../data/surface_coordinates_TA052_precise']);

But in most cases we aren't generating these files so it produces an error when PEITS is running.

Quick fix: remove these lines

• Develop a compiled version of dune-peits using a simplistic algorithm
• Use the 3D parameters in the data

PEITS verison is old dune_peits version has specifying nodes, should update

This is annoying

Load BLAS

module load openblas/0.2.14/intel-2015-update2

the date part of the output filenames have : in them. Which windows is not happy with. Makes copying them around a pain

Too many hard coded paths

things missing from markus' dune peits wiki readme

• run second long petsc installer from petsc dir
• git checkout 8695de0
• extract zoltan zip in PEITS dir
• make build DIR
• suggest different lib dir not same as repo!
• change config.opts to config.opts_example or something
• zoltan.h is missing when installing peits - forgot make install on zoltan