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Extracting PubMed Articles & converting to .db

Hi Eric,

Thanks for developing a wonderful tool.

I am trying to extract all the PubMed articles published so far in order to develop a citation network. I am using the file PMCnetworks/1-scape-parse/create_download_list_for_wget.py .

Is the query in the request: 'http://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pmc&term=%220000/01/01%22[PDAT]%20:%20%223000/12/31%22[PDAT]&RetMax=3956406&RetStart=0'.

Would it grab all the articles? I used the query I got db=pmc&id "3,956,369". Do you think the no. seems right?

Also how to convert to .db from "out.txt". Please also clarify where can I get the graph_tool python library. pip doesn't have it. I am looking forward to your Response.

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