Project assignment for Bioinformatics course at University of Zagreb, Faculty of Electrical Engineering and Computing (UNIZG FER), academic year 2017/2018.
git clone https://github.com/Dzaposlav/bioinf
cd bioinf
chmod +x scripts/*
bash scripts/compile.sh
./bioinf input_file
Input file must be in FASTA format
scripts/dl_bacteria.sh
scripts/gen_all.sh
This will download DNA FASTA file of four bacterias into bacterias folder, generate synthetic files of varying lengths (100-1M) into synth folder and generate commands of varying number of commands.
./bioinf synth/example_1000.fa
Testing is done via python script which takes files to test as arguments
python3 scripts/tests.py file1 [, file2, ...]
MIT License
Copyright (c) 2017 Frane Džapo, Darko Dašić