msr-seq

Scripts useful for processing NextGen sequencing data generated with CHRIS-seq

myproject

URL to my project website

mytai

Evolutionary Transcriptomics with R

neural_network_performance_guide_1

Materials of RCC workshop

new_workflowr_tutorial

noah

Bash on Ubuntu on macOS

numerical_methods

Select programs written for my undergrad course in numerical and scientific methods

odp

oxford dot plots

pegrna_rank

Deep learning MLP model to rank pegRNA sequence

phyloacc

PhyloAcc a software to detect the changes of conservation of a genomic region

physcripts

Python scripts (and a few non-python) that have come in handy for various phylogenetics-related tasks

poole

The Jekyll Butler.

population-genetics

Scripts from grad course in pop gen

practical-machine-learning

Project for the Coursera "Practical Machine Learning" class

practicalmachinelearning_2014

Course Project for Practical Machine Learning on Coursera

programmingassignment2

Repository for Programming Assignment 2 for R Programming on Coursera

pyprobml

Python code for "Probabilistic Machine learning" book by Kevin Murphy

python-bcalm

Python implementation of the BCALM algorithm

regression-models-course-project

Coursera Regression Models Course Project

repdata_peerassessment1

Peer Assessment 1 for Reproducible Research

reproducibleresearchproj_one

rnaseq_trinity_tuxedo_workshop

materials for the RNA-Seq workshop on Trinity and Tuxedo, covering de novo and genome-guided transcript assembly and downstream analysis.

rnaseq_tutorial

Informatics for RNA-seq: A web resource for analysis on the cloud. Educational tutorials and working pipelines for RNA-seq analysis including an introduction to: cloud computing, critical file formats, reference genomes, gene annotation, expression, differential expression, alternative splicing, data visualization, and interpretation.

rnaseqmelanogaster

sc_trna_mrna

scikit-learn

scikit-learn: machine learning in Python

sequence-manipulation

A range of different perl scripts for manipulating sequences, conducting alignments, consensus sequences, changing formats

siuba

Python library for using dplyr like syntax with pandas and SQL

sonnet

TensorFlow-based neural network library

sra-tools

SRA Tools