Name: David Winter
Type: User
Bio: Computational evolutionary biology using R, Python and (sometimes) C++
Location: Wellington, New Zealand
I an an evolutoinary biologist using genomics approaches to ask fundamental biological questions. Code here includes mature tools for downloading, cleaning and analysing biolgoical data; in-development tools that arise from my research code and supporting data from some of my publications.
lorean
Long Reads Annotation pipeline
maftools
Bioinformatics tools for dealing with Multiple Alignment Format (MAF) files.
masseysg-resources
Massey study group resources.
mdm
simulating and fitting mixtures of Dirichlet multinationals in R
mmod
Differentiation statistics in R
mollusc_worshop_example
Working directory to demonstratea exploratory analyses on a GBS dataset
moreutils
Some helper functions for interacive R
mosdepth
fast BAM/CRAM depth calculation for WGS, exome, or targetted sequencing. turn up the bass (pairs)
ngmlr
NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on reads that span structural variations
nzmolecol
:triangular_ruler: A flexible two-column Jekyll theme. Perfect for personal sites, blogs, and portfolios hosted on GitHub or your own server.
organization
Logistical details, Suggestions for discussion topics, Agenda
orthologscripts
Master code for orthology differentiation
pafr
Read, manipulate and visualize 'Pairwise mApping Format' data in R
pafr-demo
A repository with code to demonstrate complete analyses using pafr and minimap2
paga_annotation
Analyses associated with the annotation of the P. agathidicida genome
pegas
My branch of Emmanuel Paradis' PEGAS library for phylogeography/popgen
reffectorp
automat requests to the effectorP web site
rensembl
Get Ensembl data in R using the REST API
rentrez
talk with NCBI entrez using R
rentrez_ms
WIP on a manuscript for rentrez (at last!)
repeatr
read and analyse RepeatMasker output
rice_sirnas
Investigation into naturally occuring siRNAs homology to human transcripts
rncl
rncl -- an R interface to the Nexus Class Library (C++)
ropensci-comcall
ropensci_intro
Slide deck for a lightning talk about the rOpenSci project
rotl
Interface to Open Tree of Life API
rotl-vignette
roweb
rOpenSci's Website
roweb2
rOpenSci website
shared-api-tests
json-formatted specifications for unit testing frameworks
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
Django
The Web framework for perfectionists with deadlines.
Laravel
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
Microsoft
Open source projects and samples from Microsoft.
Google
Google ❤️ Open Source for everyone.
Alibaba
Alibaba Open Source for everyone
D3
Data-Driven Documents codes.
Tencent
China tencent open source team.
