duydn Goto Github PK

singlecellnet

SingleCellNet: classify single cells across species and platforms

snp_calling_scripts

Collection of scripts for bacterial SNP calling

snpipeline

Tool set for converting AB genotype calls from Illumina BeadExpress FinalReport format files or Affymetrix genotype files into various formats for genomic prediction, imputation/phasing or building haplotypes.

sods17

Summer of data science 2017

springer_free_german_books

Python script to download all german Springer books released for free during the 2020 COVID-19 quarantine

sqtlseeker

R package to detect splicing QTLs (sQTLs)

stellargraph

StellarGraph - Machine Learning on Graphs

super-linter

Combination of multiple linters to install as a GitHub Action

superdelta2

supernova

10x Genomics Linked-Read Diploid De Novo Assembler

swirl_courses

:mortar_board: A collection of interactive courses for the swirl R package.

systemsgenetics

Generic Java genotype reader / writer, QTL mapping software, Strand alignment tool

tbtools

GUI/CommandLine Tool Box for biologistists to utilize NGS data.

tcgasurvival

Scripts to analyze TCGA data

ten-rules

tidy-tuesday

My occasional Tidy Tuesday contributions

tidyr

Easily tidy data with spread and gather functions.

tidytuesday

My personal collection of #tidytuesday contest

tidytuesdays

Entries for tidytuesday

timeor

TIMEOR: Trajectory Inference and Mechanism Exploration with Omics Data in R

toolbox

Analysis environment for The Cancer Genome Atlas (TCGA)

tpot

A Python Automated Machine Learning tool that optimizes machine learning pipelines using genetic programming.

treeheatr

Heatmap-integrated Decision Tree Visualizations

trgated

Survival Analysis for Protein-Level TCGA Analysis

ttree-source

Exploiting SNP correlations within Random Forest for Genome-Wide Association Studies

variances-from-random-regression

calculating covariate speciic variances and their SE on the basis of random regression estimates

varnote

Fast and scalable variant annotation tool

vispedigree

Tidying and visualization for animal pedigree

volcano3d

An R package to plot interactive three-way differential expression analysis

waddr

R package for detecting differential distributions using a statistical test based on the wasserstein distance