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View Code? Open in Web Editor NEWAfrica open COVID-19 data working group
Home Page: https://bitly.com/covid19africa-dash
License: MIT License
Africa open COVID-19 data working group
Home Page: https://bitly.com/covid19africa-dash
License: MIT License
Problem description
We would like to do the following analysis per African country:
Most of the data collected are not complete. For example, in most countries, there is a large chunk of missing data it the gender and age fields of the individuals who have tested positive.
Also for most countries, the current state of the individuals is unknown. So when new deaths occur it is hard to identify which individual in passed away.
In most countries only the first few cases that are reported on in detail, however this makes it hard to track the progression of the diseases via age and gender down the down
Please help with validating the data for the country you have chosen
We need some help with a description of line list sources for African countries. You can see sources of data we have put here https://github.com/dsfsi/covid19africa/tree/master/data
And then use it to help fill in this spreadsheet. https://docs.google.com/spreadsheets/d/1XcOZAe43A8uezREyd9Kz4kYKu_LYShOq0KY_RNo7UU0/edit?usp=sharing
Hello,
Your dataset was added to CoronaWhy (https://www.coronawhy.org/) Data Lake on Dataverse as a piece of common COVID-19 data https://datasets.coronawhy.org/dataset.xhtml?persistentId=doi:10.5072/FK2/XZCZOC
Would you be willing to help with the maintenance of your dataset in Dataverse, e.g. adding the relevant metadata and keeping the dataset up-to-date? That will help to make the dataset findable and accessible for the medical science community.
The who_covid_19_sit_rep_time_series_africa.csv data which is the time Series Data for confirmed cases only exist. I think we should add the Deaths and Recovered Time Series data as well.
Hi all,
I'm involved in the Wellcome Open Research Fund project - afrimapr - which is creating R building blocks to make health data in Africa more visible through mapping. This resource might be useful for others to build scripts/maps/apps with. It's in very early stages of development.
Please see https://www.lstmed.ac.uk/news-events/news/open-data-and-software-to-support-the-covid-19-response-in-africa and our website at http://afrimapr.org. We're currently working to make health facilities (from open data i.e. WHO and healthsites.io ) building blocks in R.
If you have any ideas about how this may be useful to you or others, please get in touch.
Have a list that can be updated daily with updated cases.
You can use the WHO situational reports (linked in /data/) to assist. How do we automatically extract from situational reports pdfs?
Add data sources for African Country Cases
Edit the https://github.com/dsfsi/covid19africa/blob/master/data/README.md with your resources
How to fork and submit changes https://opensource.com/article/19/7/create-pull-request-github
Error picked up by @JosseyMikka must be fixed.
Hi There,
Wondering why you don't use John Hopkins data and build onto it? They have done (are doing) a tremendous work to pull together a fairly solid data.
If you need inspiration on presenting the data, here is my try: virus-corona.herokuapp.com
Cheers,
Louis
BU Health has made available a file with early case information for many African countries.
Tasks:
File https://github.com/dsfsi/covid19africa/blob/master/data/staging/2020.04.01.20050203-2.xlsx
line list templates https://github.com/dsfsi/covid19africa/tree/master/data/templates
If you are concentrating on a specific country, PLEASE list yourself below to avoid duplication of work
I used JHU dataset to a create dashboard using MS power bi. The dataset consist of FIPS, Admin2,Province_State, Country_Region, Last_Update, Lat, Long_, Confirmed,Deaths, Recovered, Active, Combined_Key, Incidence_Rate, Case-Fatality_Ratio.
I am suggesting that such can be added to the github repo, and such folder can be named as covid19 africa daily report; for example South Africa case will be
South Africa | 2020-06-19 04:33:17 | -30.5595 | 22.9375 | 83890 | 1737 | 44920 | 37233 | South Africa | 141.44638837917344 | 2.070568601740374 respectively. The FIPS, Admin2, Province_State are empty.
If such dataset is added it will be easy to create a dashboard for Africa and more collaboration can be done.
The link to the dashboard preview can be found here
This data looks like its out dated I dont see recent cases for south africa, I only see about 554 cases @vukosim or the data is available here, if it here which file is the correct one?
I've been uploading the time series data for a while, but for the past five days i've been having conflicts issues, i do follow this process is this link. I've tried a lot of things but it's not still working. What other things can i do.
I was wondering if there is an idea of incorporating number of tests done per day per country in the current dataset.
I am not sure how it could be integrated in the current line-list files but adding a column 'num_tests' could be an idea.
alternatively a separate line-list with: date, num_tests, positives could handle it.
Thank you,
Million
line list β a table summarizing information about people who are infected, dead, recovered etc. The table would include demographic and location information. Such a dataset would help us understand how COVID19 transmission in Africa is similar or different to whatβs being observed in other regions of the world.
This would be part of a broader effort focused on collating COVID19 data globally. We need volunteers ASAP to help in this effort. The data will be made publicly available and volunteers will be acknowledged.
See https://github.com/dsfsi/covid19africa/blob/master/data/line-list-africa.csv
Hello, I just thought I'd share this project I did in me free time:
https://sacovidmap.netlify.com/
My code is open source so anyone who who's working on anything related may use as much of it as they want:
https://github.com/webdevan/covid-map
Disclaimer: I'm not a scientist, so use this at your own risk.
I'm using the cumulative cases CSVs in this repo and should update automatically when new data is merged (if the structure changes my map will break!). I might submit an issue to discuss how we can structure the data in a way that can scale (because it is likely to keep expanding and evolving so getting some standards and structure going would be helpful).
Anyway, just wanted to put this out there so that people can use it, and if there's any feedback let me know.
We do not have analysis notebooks as yet. See README in notebooks/ for ideas.
Hi there,
Super cool project you have here! As the list of countries in the dashboard grows, it'll be hard to have all in the same page. One possible idea to would be to have a selector for which countries to display. I did something like this for a similar project using a textbox and comparing user input to what countries are in the database.
I am not sure what is powering the dashboard, but if it's something like Python/Plotly, I'd be happy to share actual code to do this.
Stay safe and keep going strong! πͺ
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