The foler 121_SAMPLE_PVG contains data for the PVG created from all available valid LSDV genomes (n=121).

1.1 For these samples, the download process takes us through file download from NCBI Nucleotide, metadata extraction, symbol removal, an initial phylogeny, a genome length check, reporting of excluded sequences, and a final output FASTA.

1.2 We take the above fasta and use PGGB to construct a PVG from it.

1.3 odgi etc

The foler 6_SAMPLE_PVG contains data for the PVG created from 6 representative LSDV genomes for computationally efficient investigation.

2.1 PGGB etc

This folder contains tests run of the nf-core pangenome tool for LSDV, GPV, SPV and CaPV.

Tim Downing, Chandana Tennakoon, Thibaut Freville