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kegg-parsley's Introduction

polyglot

Grabs the content of as many DBs as I can think of and returns them in a sensical JSON format, just the way God intended it. If these DBs have APIs attached to them, this is then a thin-layer over the relevant GET or POST request.

Quickstart

Use db_list() to see what DBs have been included.

Implemented DBs:

  • MetaboAnalyst, KEGG, Uniprot, NCBI efetch (without using BioPython), Pubchem, BIGG, BioModels.

Developer Notes

  • This was also meant to teach myself pytest, and CI/CD with TravisCI.

Caveats

  • KEGG - heavily depends on the fact that the first 12 spaces of each line are either a key or a single white space \s.

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