Grabs the content of as many DBs as I can think of and returns them in a sensical JSON format, just the way God intended it. If these DBs have APIs attached to them, this is then a thin-layer over the relevant GET or POST request.
Use db_list()
to see what DBs have been included.
- MetaboAnalyst, KEGG, Uniprot, NCBI efetch (without using BioPython), Pubchem, BIGG, BioModels.
- This was also meant to teach myself
pytest
, and CI/CD withTravisCI
.
- KEGG - heavily depends on the fact that the first 12 spaces of each line are either a key or a single white space
\s
.