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aind-nlp-bookworm

Term 2 Project 3 NLP using IBM Watson Discover and Conversation service and IBM Bluemix platform

base

a fast and accurate de novo genome assembler for longer NGS reads

conference

cope

COPE (Connecting Overlapped Pair-End reads) is a method to align and connect the illumina sequenced Pair-End reads of which the insert size is smaller than the sum of the two read length.The connected reads can be used in genome assembly, resequencing and transcriptome research. The full citation: COPE: An accurate k-mer based pair-end reads connection tool to facilitate genome assembly Binghang Liu; Jianying Yuan; Siu-Ming Yiu; Zhenyu Li; Yinlong Xie; Yanxiang Chen; Yujian Shi; Hao Zhang; Yingrui Li; Tak-Wah Lam; Ruibang Luo Bioinformatics (2012) 28(22): 2870-2874; doi: 10.1093/bioinformatics/bts563

crossrefapi

A python library that implements the Crossref API.

diagram

GWT widget to visualise Reactome pathways

gce

genome character estimation with kmer frequency

nlpdemo

Webcast demo of NLP with IBM Watson

oncotator

prsice

A software package for calculating, applying, evaluating and plotting the results of polygenic risk scores

pypathway

A python package for pathway visualization

talkify-watson-classifier

IBM Watson NLP Classifier implementation for Talkify

watsonworkspace-nlp

A cognitive explorer bot for IBM Watson Workspace