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Data analysis, models, maps

I like my data diverse, my methods (somewhat) clean, my analyses reproducible, and my outputs open access.

I’m a computational modeller using programming, mapping, and my own research tools to crack diverse data analysis problems, from simulation modelling of human disease risk to spatial risk mapping.


My sandbox

R git Python Markdown MySQL Hugo HTML5 CSS3 Sass Javascript d3js




Latest post

Avian Airstrike: Aircraft-bird strikes across Australia (2008–2017)

Tools: R, Rmd, Mapbox, HTML, CSS




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Digital footprint

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Matt Malishev's Projects

jupyter2slides icon jupyter2slides

Cloud Native Presentation Slides with Jupyter Notebook + Reveal.js

leaflet-providers icon leaflet-providers

An extension to Leaflet that contains configurations for various free tile providers.

malishevbullkearney icon malishevbullkearney

Supplementary material for Malishev M, Michael Bull C, Kearney MR. (2018) Methods Ecol Evol. 2018;9:472–489 outlining model code, simulation procedures, and version updates

malishevcivitello_hostcontrol icon malishevcivitello_hostcontrol

Supplementary material for Modelling how resource competition among snail hosts affects the mollusciciding frequency and intensity needed to control human schistosomes

malishevcivitello_sicb icon malishevcivitello_sicb

Appendix for Malishev M & Civitello DJ Linking bioenergetics and parasite transmission models suggests mismatch between snail host density and production of human schistosomes

mapedit icon mapedit

Interactive editing of spatial data in R

misc icon misc

https://darwinanddavis.github.io/misc/

navsite icon navsite

https://unruffled-ride-70deae.netlify.com

plot_it icon plot_it

Plotting function for switching between manuscript-ready and presentation style plots in R

proj.4 icon proj.4

PROJ.4 - Cartographic Projections Library

rinteractive icon rinteractive

Interactive plots using javascript viz, including rCharts, d3js, leaflet, Richshaw, to name a few.

rnetlogo_diagnostics icon rnetlogo_diagnostics

Troubleshooting for running RNetLogo on Mac OSX, including rjava R package, java/oracle, and NetLogo diagnostics

schistoibm icon schistoibm

Individual-based Dynamic Energy Budget Schistosoma model (SIDEB) for predicting parasite emergence in the human schistosome

schistomesocosm icon schistomesocosm

Schistosome mesocosm data for cercariae shedding rates in size structured host population

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