Raw data search and processing tools for the Flipping Task in the Systems Neuroscience lab at the Champalimaud Foundation, Portugal.

The main process function is

DataIndex, Pokes, Bouts, Streaks = process_dataset(dir::String; mouse_tag = nothing, exp_name = nothing)

Process pokes, bouts and streaks dataframes for all data raw data found in the directory dir and stores them in a folder called Results followed by the current date. Returns a Tuple with 4 DataFrame in the following order:

each row contains information about a file: Path, Session, MouseID, Day, Turn

each row contains information about a single poke

A bout is defined as a series of consecutive pokes until either a reward is delivered or if the animal changes side.

A streak is defined as a series of consecutive poke on the same side.

• mouse_tag: a string to filter the file to process according to a label.

• exp_name: if a String is provided the Results folder will be created in a folder named exp_name located in the parent folder of dir.

Alternatively the index of raw data to be processed can be created separately

process_dataset(DataIndex::AbstractDataFrame; exp_name = nothing)

see get_DataIndex

The main search function is get_DataIndex

get_DataIndex(dir::String; mouse_tag = nothing)

Read all .csv files in directory dir and extract informations from the filename. It returns a DataFrame with File path, Session, MouseID, Day, Turn.

• mouse_tag: a string to filter the results according to a label.